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Sodium in PDB, part 285 (files: 11361-11400), PDB 8qay-8qyt

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 11361-11400 (PDB 8qay-8qyt).
  1. 8qay (Na: 1) - Medicago Truncatula HISN5 (Igpd) in Complex with Mn, Fmt, Act, Cit, Edo, SO4
    Other atoms: Mn (16);
  2. 8qby (Na: 1) - Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs
    Other atoms: Zn (1); Fe (28); Ca (4);
  3. 8qch (Na: 1) - Human Adenosine Deaminase-Like Protein in Complex with Compound AT8001
    Other atoms: F (8); Zn (8);
  4. 8qcu (Na: 1) - Lysozyme Covalently Bound to Fac-[Re(Co)3-Imidazole] Complex, Incubated For 38 Weeks.
    Other atoms: Br (1); Re (9); Cl (5);
  5. 8qd5 (Na: 1) - Anti SER245DHA (Psf)
  6. 8qd6 (Na: 1) - Anti SER245DHA (Pmsf)
  7. 8qeu (Na: 4) - Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Ornithine
  8. 8qev (Na: 1) - Crystal Structure of Ornithine Transcarbamylase From Arabidopsis Thaliana (Atotc) in Complex with Carbamoyl Phosphate
  9. 8qg1 (Na: 2) - Crystal Structure of Oxidized Respiratory Complex I Subunits Nuoef From Aquifex Aeolicus Bound to Adp-Ribose
    Other atoms: Cl (1); Fe (12);
  10. 8qgw (Na: 8) - Crystal Structure of Oxidized Respiratory Complex I Subunits Nuoef From Aquifex Aeolicus Bound to Oxidized 3-Acetylpyridine Adenine Dinucleotide
    Other atoms: Fe (12); Cl (1);
  11. 8qh4 (Na: 8) - Crystal Structure of Reduced Respiratory Complex I Subunits Nuoef From Aquifex Aeolicus Bound to Oxidized 3-Acetylpyridine Adenine Dinucleotide
    Other atoms: Fe (12); K (1);
  12. 8qh7 (Na: 9) - Crystal Structure of Respiratory Complex I Subunits Nuoef From Aquifex Aeolicus Bound to Reduced 3-Acetylpyridine Adenine Dinucleotide (Without Reducing Agent)
    Other atoms: Fe (12);
  13. 8qhk (Na: 2) - Crystal Structure of Reduced Respiratory Complex I Subunits Nuoef From Aquifex Aeolicus Bound to Reduced 3-Acetylpyridine Adenine Dinucleotide
    Other atoms: Fe (12);
  14. 8qj6 (Na: 1) - Crystal Structure of Cytochrome Domain 1 From Pgca
    Other atoms: Fe (1);
  15. 8qjk (Na: 1) - Structure of the Cytoplasmic Domain of CSX23 From Vibrio Cholera in Complex with Cyclic Tetra-Adenylate (CA4)
  16. 8qjm (Na: 1) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia in Complex with Cytidine-5'-Monophosphate
    Other atoms: Zn (6);
  17. 8qjo (Na: 1) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia in Complex with Guanosine-5'-Monophosphate
    Other atoms: Cl (1); Zn (6);
  18. 8qk0 (Na: 4) - Crystal Structure of Cytochrome Domain 3 From Pgca
    Other atoms: Fe (2);
  19. 8qk4 (Na: 2) - Dehydratase Domain (Pksj DH1) From the Bacillaene Trans-at Pks
    Other atoms: Cl (1);
  20. 8qnf (Na: 7) - Crystal Structure of the Condensation Domain Tombc From the Tomaymycin Non-Ribosomal Peptide Synthetase
    Other atoms: K (2);
  21. 8qng (Na: 1) - Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (Benzodiazepine Hts Hit Compound 1)
    Other atoms: Zn (2);
  22. 8qnh (Na: 1) - Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (WO2020264398 EX23)
    Other atoms: F (3); Zn (2);
  23. 8qni (Na: 1) - Crystal Structure of the E3 Ubiquitin Ligase Cbl-B with An Allosteric Inhibitor (Benzodiazepine Compound 25)
    Other atoms: Zn (2);
  24. 8qop (Na: 2) - Capra Hircus Reactive Intermediate Deaminase A - K78A
  25. 8qrd (Na: 6) - Olep in Complex with Testosterone in High Salt Crystallization Conditions
    Other atoms: Fe (6);
  26. 8qro (Na: 9) - ASCT2 Trimer in Lipid Nanodiscs with Bound Glutamine and Na+ Ions in the Outward-Facing State (Ofs)
  27. 8qrp (Na: 3) - ASCT2 Protomer in Lipid Nanodiscs with Bound Glutamine and Na+ Ions in the Outward-Facing State (Ofs.1)
  28. 8qrq (Na: 3) - ASCT2 Protomer in Lipid Nanodiscs with Bound Glutamine and Na+ Ions in the Outward-Facing State (Ofs.2)
  29. 8qrr (Na: 3) - ASCT2 Protomer in Lipid Nanodiscs with Bound Glutamine and Na+ Ions in the Outward-Facing State (Ofs.3)
  30. 8qrv (Na: 1) - ASCT2 Protomer in Lipid Nanodiscs Under Low Na+ Concentration in the Outward-Facing State (Ofs)
  31. 8qrw (Na: 1) - ASCT2 Protomer in Lipid Nanodiscs Under Low Na+ Concentration in the Intermediate Outward-Facing State (Iofs-Up)
  32. 8qtf (Na: 10) - Crystal Structure of A C-Terminally Truncated Version of Arabidopsis Thaliana 14-3-3 Omega in Complex with A Phosphopeptide From the Transcription Factor BZR1.
    Other atoms: Cl (1);
  33. 8qtg (Na: 1) - Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 9)
    Other atoms: F (3); Zn (2);
  34. 8qth (Na: 1) - Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 8)
    Other atoms: Zn (2); F (3);
  35. 8qtj (Na: 1) - Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 30)
    Other atoms: F (3); Zn (2);
  36. 8qtk (Na: 1) - Crystal Structure of Cbl-B in Complex with An Allosteric Inhibitor (Compound 31)
    Other atoms: F (3); Zn (2);
  37. 8qu7 (Na: 1) - Crystal Structure of the Plasmodium Falciparum Apical Membrane Antigen (AMA1) in Complex with Single Domain I-Body WD34
  38. 8qwr (Na: 2) - Crystal Structure of COTB2 Variant V80L
  39. 8qyi (Na: 6) - Olep in Complex with Lithocholic Acid in High Salt Crystallization Conditions
    Other atoms: Fe (6);
  40. 8qyt (Na: 1) - Human Pyridoxine-5'-Phosphate Oxidase in Complex with Plp
Page generated: Sun Dec 15 11:43:23 2024

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