Atomistry » Sodium » PDB 8djz-8e62
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Sodium in PDB, part 274 (files: 10921-10960), PDB 8djz-8e62

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 10921-10960 (PDB 8djz-8e62).
  1. 8djz (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Product
    Other atoms: Ca (1);
  2. 8dk0 (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound (S)Gamma- Valerolactone
    Other atoms: Ca (1);
  3. 8dl1 (Na: 1) - BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose
    Other atoms: Mn (4); Ca (4); Cl (1);
  4. 8dla (Na: 8) - CLPP2 From Chlamydia Trachomatis Bound By MAS1-12
    Other atoms: F (18); Cl (6);
  5. 8dmr (Na: 1) - Legionella Macrodomain Effector Mavl R370A in Complex with Adp-Ribose
  6. 8dn0 (Na: 1) - E.Coli Dsba in Complex with N-(2-Fluorophenyl)-5-Methylisoxazole-3- Carboxamide
    Other atoms: F (2); Cu (1);
  7. 8dop (Na: 6) - Crystal Structure of 2,3-Diketo-5-Methylthiopentyl-1-Phosphate Enolase-Phosphatase From Klebsiella Aerogenes (P1 Form)
    Other atoms: I (12);
  8. 8dq2 (Na: 4) - X-Ray Crystal Structure of Hansschlegelia Quercus Lanmodulin (Lanm) with Lanthanum (III) Bound at pH 7
    Other atoms: La (12);
  9. 8dqm (Na: 4) - Crystal Structure of Isoaspartyl Aminopeptidase From Roseivivax Halodurans Dsm 15395
  10. 8dr9 (Na: 2) - Crystal Structure of Human ALDH2 in Complex with Nad+ and Peg Mme 550
  11. 8drr (Na: 1) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP4-NSP5 (C4) Cut Site Sequence
  12. 8drw (Na: 12) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP9-NSP10 (C9) Cut Site Sequence
  13. 8drx (Na: 1) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP10-NSP11 (C10) Cut Site Sequence (Form 2)
  14. 8drz (Na: 4) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP13-NSP14 (C13) Cut Site Sequence
  15. 8ds1 (Na: 5) - Structure of Sars-Cov-2 Mpro in Complex with NSP12-NSP13 (C12) Cut Site Sequence
  16. 8ds2 (Na: 1) - Structure of Sars-Cov-2 Mpro in Complex with the NSP13-NSP14 (C13) Cut Site Sequence (Form 2)
  17. 8dsc (Na: 1) - Human Nampt in Complex with Substrate Nam and Small Molecule Activator Np-A1-R
    Other atoms: Cl (3);
  18. 8dt6 (Na: 2) - Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis
    Other atoms: Ca (9); Cl (2);
  19. 8dt9 (Na: 9) - Crystal Structure of Sars Cov-2 Mpro Mutant L141R with Pfizer Intravenous Inhibitor Pf-00835231
  20. 8dtq (Na: 4) - Crystal Structure of Staphylococcus Aureus PSK41 Cop
    Other atoms: Cl (3);
  21. 8duz (Na: 1) - Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic
    Other atoms: Cl (1);
  22. 8dv3 (Na: 2) - Crystal Structure of Human CD1B Presenting Phosphatidylinositol C34:1
    Other atoms: Cl (6); I (2);
  23. 8dv4 (Na: 3) - Crystal Structure of the BC8B Tcr-CD1B-Pi Complex
    Other atoms: Cl (3);
  24. 8dvh (Na: 2) - Crystal Structure of Atp-Dependent Lon Protease From Bacillus Subtillis (Bslonba)
  25. 8dw0 (Na: 1) - Glycosylase Muty Variant N146S in Complex with Dna Containing D(8-Oxo- G) Paired with An Enzyme-Generated Abasic Site (Ap) Product and Crystallized with Sodium Acetate
    Other atoms: Fe (8);
  26. 8dw4 (Na: 1) - Glycosylase Muty Variant N146S in Complex with Dna Containing D(8-Oxo- G) Paired with An Abasic Site Product (Ap) Generated By the Enzyme in Crystals By Removal of Calcium
    Other atoms: Fe (4);
  27. 8dwr (Na: 4) - Crystal Structure of the L333V Variant of Catalase-Peroxidase From Mycobacterium Tuberculosis
    Other atoms: Fe (4);
  28. 8dye (Na: 2) - Crystal Structure of Human Sdha-SDHAF4 Assembly Intermediate
  29. 8dyz (Na: 1) - Hen Lysozyme in Tetragonal Space Group at Ambient Temperature - Diffuse Scattering Dataset
    Other atoms: Cl (3);
  30. 8dz7 (Na: 1) - Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset
    Other atoms: Cl (1);
  31. 8e3k (Na: 1) - Human Pu.1 Ets-Domain (165-270) Bound to D(Aataagcggaagtggg)
  32. 8e3t (Na: 2) - Gallium-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
    Other atoms: Fe (30); Mo (2);
  33. 8e3u (Na: 2) - Nickel-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
    Other atoms: Fe (30); Mo (2);
  34. 8e4f (Na: 3) - Crystal Structure of Dihydrofolate Reductase (Dhfr) From the Filarial Nematode W. Bancrofti in Complex with Nadph and Folate
  35. 8e5c (Na: 6) - Crystal Structure of Sars Cov-2 Mpro Mutant L50F with Nirmatrelvir Captured in Two Conformational States
    Other atoms: Cl (4); F (6);
  36. 8e5i (Na: 1) - Old Yellow Enzyme 1 (NPOYE1) From Neptuniibacter Sp.
  37. 8e5s (Na: 1) - X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter Wt in An Occluded State
    Other atoms: Cl (1);
  38. 8e5v (Na: 1) - X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter Wtsoak in An Occluded State
    Other atoms: Cl (1);
  39. 8e5y (Na: 1) - Human Pu.1 Ets-Domain Bound to D(Aataagcggaagtggg) Acetate Free at pH 5.4
  40. 8e62 (Na: 2) - Structure of PCRYO_0615 From Psychrobacter Cryohalolentis, An N- Acetyltransferase Required to Produce Diacetamido-2,3-Dideoxy-D- Glucuronic Acid
Page generated: Sun Dec 15 11:42:59 2024

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