Sodium in PDB, part 274 (files: 10921-10960),
PDB 8djx-8e5y
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 10921-10960 (PDB 8djx-8e5y).
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8djx (Na: 1) - Cytosolic Ascorbate Peroxidase From Sorghum Bicolor - Compound II
Other atoms:
Fe (1);
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8djz (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Product
Other atoms:
Ca (1);
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8dk0 (Na: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound (S)Gamma- Valerolactone
Other atoms:
Ca (1);
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8dl1 (Na: 1) - BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose
Other atoms:
Mn (4);
Ca (4);
Cl (1);
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8dla (Na: 8) - CLPP2 From Chlamydia Trachomatis Bound By MAS1-12
Other atoms:
F (18);
Cl (6);
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8dmr (Na: 1) - Legionella Macrodomain Effector Mavl R370A in Complex with Adp-Ribose
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8dn0 (Na: 1) - E.Coli Dsba in Complex with N-(2-Fluorophenyl)-5-Methylisoxazole-3- Carboxamide
Other atoms:
F (2);
Cu (1);
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8dop (Na: 6) - Crystal Structure of 2,3-Diketo-5-Methylthiopentyl-1-Phosphate Enolase-Phosphatase From Klebsiella Aerogenes (P1 Form)
Other atoms:
I (12);
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8dq2 (Na: 4) - X-Ray Crystal Structure of Hansschlegelia Quercus Lanmodulin (Lanm) with Lanthanum (III) Bound at pH 7
Other atoms:
La (12);
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8dqm (Na: 4) - Crystal Structure of Isoaspartyl Aminopeptidase From Roseivivax Halodurans Dsm 15395
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8dr9 (Na: 2) - Crystal Structure of Human ALDH2 in Complex with Nad+ and Peg Mme 550
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8drr (Na: 1) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP4-NSP5 (C4) Cut Site Sequence
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8drw (Na: 12) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP9-NSP10 (C9) Cut Site Sequence
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8drx (Na: 1) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP10-NSP11 (C10) Cut Site Sequence (Form 2)
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8drz (Na: 4) - Product Structure of Sars-Cov-2 Mpro C145A Mutant in Complex with NSP13-NSP14 (C13) Cut Site Sequence
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8ds1 (Na: 5) - Structure of Sars-Cov-2 Mpro in Complex with NSP12-NSP13 (C12) Cut Site Sequence
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8ds2 (Na: 1) - Structure of Sars-Cov-2 Mpro in Complex with the NSP13-NSP14 (C13) Cut Site Sequence (Form 2)
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8dsc (Na: 1) - Human Nampt in Complex with Substrate Nam and Small Molecule Activator Np-A1-R
Other atoms:
Cl (3);
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8dt6 (Na: 2) - Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis
Other atoms:
Ca (9);
Cl (2);
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8dt9 (Na: 9) - Crystal Structure of Sars Cov-2 Mpro Mutant L141R with Pfizer Intravenous Inhibitor Pf-00835231
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8dtq (Na: 4) - Crystal Structure of Staphylococcus Aureus PSK41 Cop
Other atoms:
Cl (3);
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8duz (Na: 1) - Protective Antibody Against Gonococcal Lipooligosaccharide Bound to Peptide Mimetic
Other atoms:
Cl (1);
-
8dv3 (Na: 2) - Crystal Structure of Human CD1B Presenting Phosphatidylinositol C34:1
Other atoms:
Cl (6);
I (2);
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8dv4 (Na: 3) - Crystal Structure of the BC8B Tcr-CD1B-Pi Complex
Other atoms:
Cl (3);
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8dvh (Na: 2) - Crystal Structure of Atp-Dependent Lon Protease From Bacillus Subtillis (Bslonba)
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8dw0 (Na: 1) - Glycosylase Muty Variant N146S in Complex with Dna Containing D(8-Oxo- G) Paired with An Enzyme-Generated Abasic Site (Ap) Product and Crystallized with Sodium Acetate
Other atoms:
Fe (8);
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8dw4 (Na: 1) - Glycosylase Muty Variant N146S in Complex with Dna Containing D(8-Oxo- G) Paired with An Abasic Site Product (Ap) Generated By the Enzyme in Crystals By Removal of Calcium
Other atoms:
Fe (4);
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8dwr (Na: 4) - Crystal Structure of the L333V Variant of Catalase-Peroxidase From Mycobacterium Tuberculosis
Other atoms:
Fe (4);
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8dye (Na: 2) - Crystal Structure of Human Sdha-SDHAF4 Assembly Intermediate
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8dyz (Na: 1) - Hen Lysozyme in Tetragonal Space Group at Ambient Temperature - Diffuse Scattering Dataset
Other atoms:
Cl (3);
-
8dz7 (Na: 1) - Hen Lysozyme in Orthorhombic Space Group at Ambient Temperature - Diffuse Scattering Dataset
Other atoms:
Cl (1);
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8e3k (Na: 1) - Human Pu.1 Ets-Domain (165-270) Bound to D(Aataagcggaagtggg)
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8e3t (Na: 2) - Gallium-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Other atoms:
Fe (30);
Mo (2);
-
8e3u (Na: 2) - Nickel-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Other atoms:
Fe (30);
Mo (2);
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8e4f (Na: 3) - Crystal Structure of Dihydrofolate Reductase (Dhfr) From the Filarial Nematode W. Bancrofti in Complex with Nadph and Folate
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8e5c (Na: 6) - Crystal Structure of Sars Cov-2 Mpro Mutant L50F with Nirmatrelvir Captured in Two Conformational States
Other atoms:
Cl (4);
F (6);
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8e5i (Na: 1) - Old Yellow Enzyme 1 (NPOYE1) From Neptuniibacter Sp.
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8e5s (Na: 1) - X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter Wt in An Occluded State
Other atoms:
Cl (1);
-
8e5v (Na: 1) - X-Ray Structure of the Deinococcus Radiodurans Nramp/Mnth Divalent Transition Metal Transporter Wtsoak in An Occluded State
Other atoms:
Cl (1);
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8e5y (Na: 1) - Human Pu.1 Ets-Domain Bound to D(Aataagcggaagtggg) Acetate Free at pH 5.4
Page generated: Wed Nov 13 13:07:42 2024
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