Sodium in PDB 8c0g: Sars-Cov NSP16-NSP10 Complexed with N7-Gtp

The structure of Sars-Cov NSP16-NSP10 Complexed with N7-Gtp, PDB code: 8c0g was solved by F.Ferron, C.Debarnot, B.Coutard, B.Canard, Marseilles Structural Genomicsprogram @ Afmb (Msgp), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	92.52 / 1.88
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	67.232, 185.042, 128.577, 90, 90, 90
R / Rfree (%)	24.5 / 26.3

The structure of Sars-Cov NSP16-NSP10 Complexed with N7-Gtp also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Sodium atom in the Sars-Cov NSP16-NSP10 Complexed with N7-Gtp (pdb code 8c0g). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sars-Cov NSP16-NSP10 Complexed with N7-Gtp, PDB code: 8c0g:

Sodium binding site 1 out of 1 in the Sars-Cov NSP16-NSP10 Complexed with N7-Gtp


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sars-Cov NSP16-NSP10 Complexed with N7-Gtp within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:48.5 occ:1.00 O A:LEU279 2.6 36.2 1.0 O A:LEU274 2.7 35.7 1.0 CA A:GLY277 2.8 41.2 1.0 C A:GLY277 3.1 40.6 1.0 N A:LEU279 3.3 36.3 1.0 N A:ARG278 3.3 39.7 1.0 N A:GLY277 3.3 40.8 1.0 C A:LEU274 3.5 35.7 1.0 CA A:GLY163 3.5 33.5 1.0 CA A:LEU274 3.5 36.4 1.0 ND2 A:ASN209 3.5 34.6 1.0 C A:LEU279 3.6 36.1 1.0 O A:GLY163 3.7 33.2 1.0 O A:LEU273 3.8 37.3 1.0 O A:GLY277 3.8 40.5 1.0 CB A:ALA59 4.0 34.7 1.0 CA A:LEU279 4.0 35.9 1.0 C A:GLY163 4.1 33.1 1.0 CG A:ASN209 4.3 34.9 1.0 C A:ARG278 4.3 38.1 1.0 CA A:ARG278 4.4 39.5 1.0 N A:LEU274 4.5 36.5 1.0 CD2 A:LEU274 4.5 37.6 1.0 CB A:LEU274 4.5 36.4 1.0 C A:LEU273 4.5 37.8 1.0 CB A:ASN209 4.6 32.0 1.0 C A:LYS276 4.6 41.0 1.0 CB A:LEU279 4.7 35.9 1.0 N A:GLU275 4.8 35.0 1.0 N A:GLY163 4.8 33.7 1.0 N A:ILE280 4.8 35.8 1.0 CA A:ALA59 4.9 34.1 1.0

F.Ferron, B.Canard, C.Debarnot, B.Coutard. Observation of N7-Gtp in NSP16-NSP10 Sars-Cov To Be Published.