Sodium in PDB 8bvf: MOEA2 From Corynebacterium Glutamicum in Complex with Ftsz-Ctd

The structure of MOEA2 From Corynebacterium Glutamicum in Complex with Ftsz-Ctd, PDB code: 8bvf was solved by M.Martinez, A.Haouz, A.M.Wehenkel, P.M.Alzari, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.20 / 2.68
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	95.58, 95.58, 229.522, 90, 90, 90
R / Rfree (%)	18.4 / 24

The binding sites of Sodium atom in the MOEA2 From Corynebacterium Glutamicum in Complex with Ftsz-Ctd (pdb code 8bvf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the MOEA2 From Corynebacterium Glutamicum in Complex with Ftsz-Ctd, PDB code: 8bvf:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the MOEA2 From Corynebacterium Glutamicum in Complex with Ftsz-Ctd


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of MOEA2 From Corynebacterium Glutamicum in Complex with Ftsz-Ctd within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:67.2 occ:1.00 O A:ARG352 2.3 58.1 1.0 O A:PRO398 2.7 67.7 1.0 O A:VAL401 2.9 82.8 1.0 OG A:SER348 2.9 63.8 1.0 O A:VAL349 3.1 70.0 1.0 O A:GLU399 3.2 71.8 1.0 C A:ARG352 3.5 57.2 1.0 C A:PRO398 3.6 66.5 1.0 C A:GLU399 3.6 71.5 1.0 CA A:GLU399 3.7 66.1 1.0 CG2 A:ILE397 3.7 62.5 1.0 CB A:SER348 3.8 69.2 1.0 O A:ILE397 3.9 58.4 1.0 N A:GLU399 4.0 66.3 1.0 C A:VAL401 4.1 82.5 1.0 C A:VAL349 4.2 70.0 1.0 N A:ARG352 4.2 62.9 1.0 N A:GLY354 4.3 49.4 1.0 C A:ILE397 4.4 57.5 1.0 N A:LYS353 4.4 54.0 1.0 CA A:LYS353 4.4 53.5 1.0 CB A:ILE397 4.4 56.3 1.0 CA A:ARG352 4.5 59.9 1.0 N A:VAL349 4.5 67.9 1.0 N A:VAL401 4.5 77.0 1.0 N A:ASP400 4.6 77.3 1.0 C A:SER348 4.6 75.2 1.0 C A:LYS353 4.7 51.0 1.0 N A:PRO398 4.7 63.8 1.0 CA A:PRO398 4.7 66.2 1.0 N A:GLY351 4.8 69.1 1.0 CA A:VAL401 4.8 78.8 1.0 CA A:SER348 4.9 73.0 1.0 NE2 A:HIS285 4.9 54.1 1.0 C A:ASP400 4.9 80.9 1.0 CA A:VAL349 5.0 68.4 1.0 N A:ALA350 5.0 72.8 1.0 CA A:ALA350 5.0 71.2 1.0

Sodium binding site 2 out of 2 in the MOEA2 From Corynebacterium Glutamicum in Complex with Ftsz-Ctd


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of MOEA2 From Corynebacterium Glutamicum in Complex with Ftsz-Ctd within 5.0Å range: probe atom residue distance (Å) B Occ B:Na501 b:37.3 occ:1.00 O B:PRO398 2.6 32.3 1.0 O B:ARG352 2.7 29.2 1.0 O B:VAL401 2.8 32.7 1.0 O B:VAL349 2.8 32.2 1.0 O B:GLU399 2.9 35.7 1.0 OG B:SER348 3.1 32.6 1.0 C B:GLU399 3.3 38.0 1.0 C B:PRO398 3.6 33.6 1.0 CA B:GLU399 3.6 38.6 1.0 C B:VAL349 3.8 30.0 1.0 C B:VAL401 3.9 33.0 1.0 CG2 B:ILE397 3.9 28.1 1.0 CB B:SER348 3.9 30.2 1.0 C B:ARG352 3.9 33.6 1.0 N B:VAL401 4.0 33.5 1.0 N B:GLU399 4.0 36.6 1.0 N B:ASP400 4.1 37.6 1.0 N B:VAL349 4.2 31.0 1.0 O B:ILE397 4.2 29.8 1.0 N B:ARG352 4.4 31.9 1.0 CA B:VAL401 4.4 32.7 1.0 C B:ASP400 4.5 36.0 1.0 C B:SER348 4.5 30.4 1.0 N B:GLY351 4.5 32.7 1.0 N B:ALA350 4.6 31.2 1.0 CA B:ALA350 4.6 29.8 1.0 C B:ILE397 4.6 29.0 1.0 CA B:VAL349 4.6 27.9 1.0 N B:GLY354 4.6 30.3 1.0 CA B:ASP400 4.7 36.6 1.0 CB B:ILE397 4.8 28.4 1.0 CA B:ARG352 4.8 35.0 1.0 CB B:VAL401 4.8 32.2 1.0 CA B:LYS353 4.8 32.4 1.0 CA B:PRO398 4.8 32.0 1.0 N B:LYS353 4.8 32.2 1.0 CA B:SER348 4.8 30.0 1.0 N B:PRO398 4.9 30.4 1.0 N B:THR402 5.0 33.5 1.0 C B:ALA350 5.0 30.9 1.0 O B:SER348 5.0 31.2 1.0

M.Martinez, J.Petit, A.Leyva, A.Sogues, D.Megrian, A.Rodriguez, Q.Gaday, M.Ben Assaya, M.Portela, A.Haouz, A.Ducret, C.Grangeasse, P.M.Alzari, R.Dur N, A.Wehenkel. Eukaryotic-Like Gephyrin and Cognate Membrane Receptor Coordinate Corynebacterial Cell Division and Polar Elongation. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 36778425
DOI: 10.1101/2023.02.01.526586