Sodium in PDB 8brd: Mechanisms of Ion Selectivity and Rotor Coupling in the Bacterial Flagellar Sodium-Driven Stator Unit

The binding sites of Sodium atom in the Mechanisms of Ion Selectivity and Rotor Coupling in the Bacterial Flagellar Sodium-Driven Stator Unit (pdb code 8brd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Mechanisms of Ion Selectivity and Rotor Coupling in the Bacterial Flagellar Sodium-Driven Stator Unit, PDB code: 8brd:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Mechanisms of Ion Selectivity and Rotor Coupling in the Bacterial Flagellar Sodium-Driven Stator Unit


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mechanisms of Ion Selectivity and Rotor Coupling in the Bacterial Flagellar Sodium-Driven Stator Unit within 5.0Å range: probe atom residue distance (Å) B Occ E:Na301 b:13.1 occ:1.00 O E:ALA182 2.2 24.9 1.0 OG1 E:THR158 2.2 30.0 1.0 OG1 E:THR186 2.3 28.9 1.0 OG1 E:THR185 2.4 21.1 1.0 O E:GLY154 2.6 29.6 1.0 N E:THR186 2.8 22.9 1.0 N E:THR158 3.0 15.6 1.0 C E:ALA182 3.3 16.8 1.0 CB E:THR186 3.3 15.1 1.0 CB E:THR158 3.3 28.0 1.0 CB E:THR185 3.3 16.7 1.0 CA E:THR158 3.3 22.5 1.0 CA E:THR186 3.5 20.5 1.0 C E:THR185 3.6 20.9 1.0 C E:GLY157 3.7 10.1 1.0 C E:GLY154 3.7 23.3 1.0 CA E:THR185 3.9 16.4 1.0 CA E:ALA182 3.9 15.1 1.0 N E:THR185 4.1 19.5 1.0 O E:VAL181 4.2 21.4 1.0 O E:HOH402 4.2 30.0 1.0 CG2 E:THR158 4.3 21.3 1.0 CA E:GLY157 4.3 5.3 1.0 CA E:GLY154 4.3 8.3 1.0 O E:GLY157 4.3 16.3 1.0 N E:LEU183 4.4 23.4 1.0 O E:HOH401 4.4 30.0 1.0 O E:LEU183 4.5 27.2 1.0 CG2 E:THR186 4.6 15.7 1.0 C E:LEU183 4.6 14.9 1.0 O E:THR185 4.6 25.3 1.0 CG2 E:THR185 4.7 20.6 1.0 CA E:LEU183 4.7 16.6 1.0 N E:MET155 4.7 27.7 1.0 N E:GLY157 4.8 18.0 1.0 CB E:ALA182 4.8 20.3 1.0 C E:THR158 4.9 18.8 1.0 C E:THR186 4.9 25.7 1.0 N E:ALA182 5.0 22.8 1.0 CA E:MET155 5.0 15.1 1.0

Sodium binding site 2 out of 2 in the Mechanisms of Ion Selectivity and Rotor Coupling in the Bacterial Flagellar Sodium-Driven Stator Unit


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Mechanisms of Ion Selectivity and Rotor Coupling in the Bacterial Flagellar Sodium-Driven Stator Unit within 5.0Å range: probe atom residue distance (Å) B Occ G:Na101 b:24.5 occ:1.00 OD2 G:ASP24 2.2 26.4 1.0 O B:HOH302 2.3 30.7 1.0 O B:PRO151 3.0 19.2 1.0 CG G:ASP24 3.2 19.3 1.0 CB G:ASP24 3.5 18.8 1.0 CA G:THR21 3.6 17.1 1.0 C B:PRO151 3.7 16.1 1.0 CA B:PRO151 3.8 10.6 1.0 OG1 G:THR21 3.8 32.6 1.0 N B:MET155 3.9 13.6 1.0 CB B:PRO151 3.9 15.9 1.0 N G:THR21 3.9 22.8 1.0 O G:GLY20 4.0 30.4 1.0 O B:HOH304 4.1 30.0 1.0 CB G:THR21 4.1 23.1 1.0 C G:GLY20 4.1 25.2 1.0 CG2 B:THR186 4.2 13.3 1.0 OD1 G:ASP24 4.3 18.5 1.0 C B:GLY154 4.3 11.6 1.0 CG2 G:THR21 4.4 20.0 1.0 CB B:MET155 4.4 17.6 1.0 OG1 B:THR186 4.4 32.6 1.0 CA B:GLY154 4.4 4.5 1.0 CA B:MET155 4.5 11.1 1.0 CB B:THR186 4.7 11.0 1.0 C G:THR21 4.7 19.1 1.0 CA B:THR186 4.7 5.4 1.0 O G:THR21 4.9 15.1 1.0 CA G:ASP24 4.9 11.7 1.0 O B:THR186 4.9 19.3 1.0 N B:ALA152 5.0 17.9 1.0 O B:GLY154 5.0 21.5 1.0 N B:GLY154 5.0 26.1 1.0

H.Haidai, M.N.T.Nicholas. Mechanisms of Ion Selectivity and Rotor Coupling in the Bacterial Flagellar Sodium-Driven Stator Unit To Be Published.