Sodium in PDB, part 253 (files: 10081-10120),
PDB 7opz-7pfg
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 10081-10120 (PDB 7opz-7pfg).
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7opz (Na: 1) - Camel GSTM1-1 in Complex with Glutathione
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7oq1 (Na: 2) - Nak S-Elm Mutant with Na+ and K+
Other atoms:
K (3);
Cl (1);
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7oq2 (Na: 4) - Nak S-Di Mutant Soaked in Na+
Other atoms:
K (2);
Cl (2);
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7oqr (Na: 4) - Crystal Structure of Trypanosoma Cruzi Peroxidase
Other atoms:
Fe (2);
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7ov2 (Na: 1) - Crystal Structure of Pig Purple Acid Phosphatase in Complex with L- Glutamine, (Poly)Ethylene Glycol Fragments and Glycerol
Other atoms:
Fe (2);
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7ov3 (Na: 1) - Crystal Structure of Pig Purple Acid Phosphatase in Complex with Maybridge Fragment CC063346, Dimethyl Sulfoxide and Citrate
Other atoms:
Fe (2);
Cl (1);
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7ov8 (Na: 2) - Crystal Structure of Pig Purple Acid Phosphatase in Complex with 4-(2- Hydroxyethyl)-1-Piperazineethanesulfonic Acid (Hepes) and Glycerol
Other atoms:
Fe (2);
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7oxx (Na: 4) - CRABP2 Mutant R30AK31A
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7oyl (Na: 1) - Phosphoglucose Isomerase of Aspergillus Fumigatus in Complexed with Glucose-6-Phosphate
Other atoms:
Cl (2);
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7ozq (Na: 6) - Crystal Structure of Archaeal L7AE Bound to Eukaryotic Kink-Loop
Other atoms:
Cl (1);
Ca (3);
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7p0c (Na: 1) - Urate Oxidase with 8-Azaxanthine Under 210 Mpa Pressure
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7p0d (Na: 1) - Urate Oxidase with 8-Azaxanthine Under 310 Mpa Pressure
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7p0g (Na: 1) - Urate Oxidase with 8-Azaxanthine Under Ambient Pressure
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7p0j (Na: 2) - Crystal Structure of S.Pombe MDB1 Brct Domains
Other atoms:
Mg (1);
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7p0v (Na: 1) - Crystal Structure of Human SF3A1 Ubiquitin-Like Domain in Complex with U1 Snrna Stem-Loop 4
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7p0w (Na: 2) - Crystal Structure of A Trapped Pab-Agog/Double-Standed Dna Covalent Intermediate (Dna Containing Thymine Opposite to Lesion)
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7p0x (Na: 2) - Crystal Structure of Thioredoxin Reductase From Brugia Malayi
Other atoms:
Cl (3);
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7p18 (Na: 1) - Crystal Structure of 3-Ketosteroid DELTA1-Dehydrogenase From Sterolibacterium Denitrificans in Complex with 1,4-Androstadiene-3, 17-Dione
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7p1r (Na: 4) - Structure of Trichophyton Rubrum Kdnase in Complex with 2,3-Difluoro- Kdn
Other atoms:
F (4);
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7p1s (Na: 4) - Structure of Kdnase From Trichophyton Rubrum in Complex with 2,3- Didehydro-2,3-Dideoxy-D-Glycero-D-Galacto-Nonulosonic Acid.
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7p23 (Na: 1) - Thaumatin-Like Protein of Puccinia Graminis
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7p2h (Na: 2) - Dimethylated Fusion Protein of Rsl and Mussel Adhesion Peptide (Mefp) in Complex with Cucurbit[7]Uril, H3 Sheet Assembly
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7p2j (Na: 2) - Dimethylated Fusion Protein of Rsl and Trimeric Coiled Coil (4DZN) in Complex with Cucurbit[7]Uril, H3 Sheet Assembly
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7p3i (Na: 2) - Crystal Structure of Human CD40/TNFRSF5 in Complex with the Anti-CD40 Darpin Protein
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7p4j (Na: 1) - Crystal Structure of Autotaxin and Tetrahydrocannabinol
Other atoms:
Ca (2);
Zn (2);
I (19);
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7p4l (Na: 14) - Crystal Structure of the Trimeric Ectodomain of Archaeal FUSEXIN1 (FSX1)
Other atoms:
Ca (31);
Cl (21);
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7p51 (Na: 2) - Crystal Structure of the Sars-Cov-2 Main Protease Complexed with Fragment F01
Other atoms:
Cl (1);
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7p8p (Na: 3) - Crystal Structure of Fhit Covalently Bound to A Nucleotide
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7p8z (Na: 2) - Short Wilavidin Biotin Complex
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7p9q (Na: 6) - Crystal Structure of Indole 3-Carboxylic Acid Decarboxylase From Arthrobacter Nicotianae FI1612 in Complex with Co-Factor Prfmn.
Other atoms:
Mn (6);
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7pcm (Na: 1) - Burg (Holo) in Complex with (Z)-2,3-Dihydroxy-6-Methyl-Hept-2-Enoate (13): Biosynthesis of Cyclopropanol Rings in Bacterial Toxins
Other atoms:
Mg (4);
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7pco (Na: 1) - Burg E232Q Mutant (Holo) in Complex with 2R,3R-2,3-Dihydroxy-6-Methyl- Heptanoate (12): Biosynthesis of Cyclopropanol Rings in Bacterial Toxins
Other atoms:
Mg (4);
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7pda (Na: 1) - Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum
Other atoms:
Mn (1);
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7pek (Na: 2) - Crystal Structure of Triosephosphate Isomerase C216A Mutant From Schizosaccharomyces Pombe (Sptim C216A)
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7pen (Na: 2) - Crystal Structure of Two-Domain Laccase Mutant Y230A From Streptomyces Griseoflavus
Other atoms:
Cu (24);
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7pes (Na: 4) - Crystal Structure of Two-Domain Laccase Mutant M199G From Streptomyces Griseoflavus
Other atoms:
Cu (24);
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7pf7 (Na: 3) - Apo Structure of Synftn Variant D65A
Other atoms:
Cl (1);
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7pf8 (Na: 4) - Synftn Variant E141A
Other atoms:
Cl (2);
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7pf9 (Na: 1) - Synftn Variant E141D
Other atoms:
Cl (3);
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7pfg (Na: 1) - 2 Minute FE2+ Soaked Structure of Synftn Variant E141A
Other atoms:
Fe (2);
Cl (1);
Page generated: Wed Nov 13 13:06:53 2024
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