Sodium in PDB 7pek: Crystal Structure of Triosephosphate Isomerase C216A Mutant From Schizosaccharomyces Pombe (Sptim C216A)

All present enzymatic activity of Crystal Structure of Triosephosphate Isomerase C216A Mutant From Schizosaccharomyces Pombe (Sptim C216A):
5.3.1.1;

The structure of Crystal Structure of Triosephosphate Isomerase C216A Mutant From Schizosaccharomyces Pombe (Sptim C216A), PDB code: 7pek was solved by S.Romero-Romero, G.Garza-Ramos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.12 / 1.74
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	149.01, 149.01, 99.51, 90, 90, 90
R / Rfree (%)	17.7 / 20.7

The binding sites of Sodium atom in the Crystal Structure of Triosephosphate Isomerase C216A Mutant From Schizosaccharomyces Pombe (Sptim C216A) (pdb code 7pek). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Triosephosphate Isomerase C216A Mutant From Schizosaccharomyces Pombe (Sptim C216A), PDB code: 7pek:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Triosephosphate Isomerase C216A Mutant From Schizosaccharomyces Pombe (Sptim C216A)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Triosephosphate Isomerase C216A Mutant From Schizosaccharomyces Pombe (Sptim C216A) within 5.0Å range: probe atom residue distance (Å) B Occ C:Na304 b:37.0 occ:1.00 O C:HOH461 2.5 36.2 1.0 OE1 C:GLU164 2.8 36.1 1.0 N C:SER96 2.9 27.6 1.0 O C:HOH529 3.2 31.2 1.0 CB C:GLU164 3.5 37.3 1.0 CB C:SER96 3.5 33.1 1.0 CB C:CYS126 3.6 24.9 1.0 CD C:GLU164 3.7 37.3 1.0 CA C:HIS95 3.7 27.1 1.0 CD2 C:HIS95 3.7 28.1 1.0 C C:HIS95 3.7 29.1 1.0 CA C:SER96 3.7 28.7 1.0 CG C:HIS95 3.8 26.5 1.0 CG C:GLU164 3.8 33.8 1.0 CD1 C:ILE169 3.9 39.6 1.0 NE2 C:HIS95 3.9 29.3 1.0 ND1 C:HIS95 4.0 28.2 1.0 CE1 C:HIS95 4.1 29.6 1.0 SG C:CYS126 4.2 30.1 1.0 CB C:HIS95 4.3 29.0 1.0 O C:GLY94 4.5 28.8 1.0 O C:GLU164 4.7 39.4 1.0 CA C:CYS126 4.7 25.4 1.0 O C:ILE127 4.8 30.5 1.0 CA C:GLU164 4.8 34.7 1.0 OE2 C:GLU164 4.8 34.4 1.0 N C:HIS95 4.8 26.0 1.0 OG C:SER96 4.9 35.9 1.0 O C:HIS95 4.9 26.2 1.0 C C:CYS126 4.9 28.1 1.0 N C:ILE127 5.0 27.4 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Triosephosphate Isomerase C216A Mutant From Schizosaccharomyces Pombe (Sptim C216A)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Triosephosphate Isomerase C216A Mutant From Schizosaccharomyces Pombe (Sptim C216A) within 5.0Å range: probe atom residue distance (Å) B Occ C:Na305 b:31.9 occ:1.00 O C:HOH439 2.9 39.6 1.0 OE2 C:GLU164 2.9 34.4 1.0 NE2 C:HIS95 3.1 29.3 1.0 ND2 C:ASN10 3.4 26.5 1.0 OE1 C:GLU164 3.6 36.1 1.0 CD C:GLU164 3.7 37.3 1.0 CE C:LYS12 3.7 31.1 1.0 CB C:ASN10 3.8 25.4 1.0 CD2 C:HIS95 3.8 28.1 1.0 CG C:LEU229 4.0 30.2 1.0 CD2 C:LEU229 4.0 28.5 1.0 CA C:GLY231 4.0 27.8 1.0 CG C:ASN10 4.1 28.2 1.0 NZ C:LYS12 4.1 33.3 1.0 CE1 C:HIS95 4.2 29.6 1.0 N C:GLY231 4.3 29.8 1.0 O C:VAL230 4.4 29.9 1.0 C C:VAL230 4.5 30.2 1.0 O C:LEU229 4.5 29.1 1.0 O2 C:SO4301 4.7 38.6 1.0 C C:LEU229 4.8 29.1 1.0 CD1 C:LEU229 4.9 29.1 1.0 CB C:LEU229 4.9 28.0 1.0

S.Romero-Romero, G.Garza-Ramos. Crystal Structure of Triosephosphate Isomerase From Schizosaccharomyces Pombe (Sptim C216A) To Be Published.