Sodium in PDB 7p2j: Dimethylated Fusion Protein of Rsl and Trimeric Coiled Coil (4DZN) in Complex with Cucurbit[7]Uril, H3 Sheet Assembly

The structure of Dimethylated Fusion Protein of Rsl and Trimeric Coiled Coil (4DZN) in Complex with Cucurbit[7]Uril, H3 Sheet Assembly, PDB code: 7p2j was solved by K.Ramberg, S.Engilberge, P.B.Crowley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	107.54 / 1.98
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	51.617, 51.617, 322.633, 90, 90, 120
R / Rfree (%)	20.1 / 25

The binding sites of Sodium atom in the Dimethylated Fusion Protein of Rsl and Trimeric Coiled Coil (4DZN) in Complex with Cucurbit[7]Uril, H3 Sheet Assembly (pdb code 7p2j). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Dimethylated Fusion Protein of Rsl and Trimeric Coiled Coil (4DZN) in Complex with Cucurbit[7]Uril, H3 Sheet Assembly, PDB code: 7p2j:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Dimethylated Fusion Protein of Rsl and Trimeric Coiled Coil (4DZN) in Complex with Cucurbit[7]Uril, H3 Sheet Assembly


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Dimethylated Fusion Protein of Rsl and Trimeric Coiled Coil (4DZN) in Complex with Cucurbit[7]Uril, H3 Sheet Assembly within 5.0Å range: probe atom residue distance (Å) B Occ A:Na104 b:36.3 occ:0.33 O07 A:QQ7101 2.5 40.8 1.0 O10 A:QQ7101 2.7 39.9 1.0 C21 A:QQ7101 3.6 34.9 1.0 C23 A:QQ7101 3.8 37.8 1.0 C39 A:QQ7101 3.8 32.8 1.0 O A:HOH224 4.1 41.0 1.0 N15 A:QQ7101 4.2 33.9 1.0 N17 A:QQ7101 4.2 35.3 1.0 N12 A:QQ7101 4.8 38.2 1.0 O A:HOH293 4.9 46.3 0.3 N20 A:QQ7101 5.0 38.5 1.0

Sodium binding site 2 out of 2 in the Dimethylated Fusion Protein of Rsl and Trimeric Coiled Coil (4DZN) in Complex with Cucurbit[7]Uril, H3 Sheet Assembly


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Dimethylated Fusion Protein of Rsl and Trimeric Coiled Coil (4DZN) in Complex with Cucurbit[7]Uril, H3 Sheet Assembly within 5.0Å range: probe atom residue distance (Å) B Occ B:Na104 b:37.0 occ:0.33 O B:QQ7101 2.5 38.2 1.0 O06 B:QQ7101 2.7 38.0 1.0 C35 B:QQ7101 3.6 36.5 1.0 C17 B:QQ7101 3.8 35.2 1.0 C41 B:QQ7101 3.8 34.5 1.0 N B:QQ7101 4.1 38.9 1.0 N14 B:QQ7101 4.2 34.5 1.0 N25 B:QQ7101 4.8 41.3 1.0 N09 B:QQ7101 5.0 38.6 1.0

K.O.Ramberg, F.Guagnini, S.Engilberge, M.A.Wronska, M.L.Rennie, J.Perez, P.B.Crowley. Segregated Protein-Cucurbit[7]Uril Crystalline Architectures Via Modulatory Peptide Tectons. Chemistry 2021.
ISSN: ISSN 0947-6539
PubMed: 34432924
DOI: 10.1002/CHEM.202103025