Sodium in PDB 7pda: Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum

The structure of Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum, PDB code: 7pda was solved by D.Gahloth, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.12 / 2.65
Space group	P 3 1 2
Cell size a, b, c (Å), α, β, γ (°)	124.696, 124.696, 68.846, 90, 90, 120
R / Rfree (%)	18.4 / 25.8

The structure of Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum (pdb code 7pda). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum, PDB code: 7pda:

Sodium binding site 1 out of 1 in the Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum within 5.0Å range: probe atom residue distance (Å) B Occ A:Na503 b:60.6 occ:1.00 O A:ALA214 2.5 79.7 1.0 OE1 A:GLU224 2.6 89.9 1.0 O4' A:4LU502 3.0 82.9 0.9 O A:ILE216 3.0 78.9 1.0 O A:VAL161 3.1 76.2 1.0 O2P A:4LU502 3.1 83.4 0.9 O5' A:4LU502 3.2 77.4 0.9 O3P A:4LU502 3.3 84.7 0.9 P A:4LU502 3.4 80.1 0.9 C4' A:4LU502 3.4 80.0 0.9 CD A:GLU224 3.6 90.7 1.0 C A:ALA214 3.6 77.0 1.0 MN A:MN501 3.7 95.6 1.0 CA A:GLY162 3.8 74.5 1.0 C5' A:4LU502 3.8 78.8 0.9 CG A:GLU224 3.9 89.3 1.0 C A:VAL161 4.0 76.8 1.0 C A:ILE216 4.1 82.3 1.0 N A:GLY162 4.3 76.5 1.0 N A:ALA218 4.4 92.6 1.0 O A:ALA213 4.5 85.8 1.0 CA A:ALA214 4.5 76.8 1.0 N A:ILE216 4.5 77.4 1.0 C A:ALA215 4.5 76.3 1.0 N A:ALA215 4.6 75.2 1.0 CB A:GLU224 4.7 86.7 1.0 OE2 A:GLU224 4.7 90.1 1.0 O A:ALA215 4.8 75.0 1.0 CA A:ALA215 4.8 75.5 1.0 C3' A:4LU502 4.9 78.3 0.9 CA A:ALA217 4.9 88.4 1.0 N A:ALA217 4.9 86.2 1.0 O1P A:4LU502 4.9 80.4 0.9 ND2 A:ASN160 4.9 86.4 1.0 CA A:ILE216 4.9 80.0 1.0

D.Gahloth, D.Leys. Crystal Structure of Phenazine 1-Carboxylic Acid Decarboxylase From Mycobacterium Fortuitum To Be Published.