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Sodium in PDB 7oyl: Phosphoglucose Isomerase of Aspergillus Fumigatus in Complexed with Glucose-6-Phosphate

Enzymatic activity of Phosphoglucose Isomerase of Aspergillus Fumigatus in Complexed with Glucose-6-Phosphate

All present enzymatic activity of Phosphoglucose Isomerase of Aspergillus Fumigatus in Complexed with Glucose-6-Phosphate:
5.3.1.9;

Protein crystallography data

The structure of Phosphoglucose Isomerase of Aspergillus Fumigatus in Complexed with Glucose-6-Phosphate, PDB code: 7oyl was solved by O.G.Raimi, K.Yan, W.Fang, D.M.F.Van Aalten, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.66 / 1.78
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 85.251, 85.251, 232.503, 90, 90, 90
R / Rfree (%) 15.4 / 18

Other elements in 7oyl:

The structure of Phosphoglucose Isomerase of Aspergillus Fumigatus in Complexed with Glucose-6-Phosphate also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Phosphoglucose Isomerase of Aspergillus Fumigatus in Complexed with Glucose-6-Phosphate (pdb code 7oyl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Phosphoglucose Isomerase of Aspergillus Fumigatus in Complexed with Glucose-6-Phosphate, PDB code: 7oyl:

Sodium binding site 1 out of 1 in 7oyl

Go back to Sodium Binding Sites List in 7oyl
Sodium binding site 1 out of 1 in the Phosphoglucose Isomerase of Aspergillus Fumigatus in Complexed with Glucose-6-Phosphate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Phosphoglucose Isomerase of Aspergillus Fumigatus in Complexed with Glucose-6-Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na608

b:29.8
occ:1.00
 O A:HOH1116 2.7 44.8 1.0
OE1 A:GLN300 2.8 41.6 1.0
OG A:SER482 2.8 25.4 1.0
N A:SER482 3.3 23.0 1.0
CB A:SER482 3.4 22.6 1.0
OG1 A:THR480 3.6 24.2 1.0
CB A:THR480 3.6 23.5 1.0
CD A:PRO481 3.9 26.1 1.0
CB A:GLN300 3.9 30.4 1.0
CA A:SER482 3.9 23.1 1.0
N A:PRO481 3.9 24.8 1.0
CD A:GLN300 3.9 42.4 1.0
CB A:ASP52 4.0 29.6 1.0
CB A:PRO481 4.2 25.4 1.0
CG1 A:VAL51 4.2 31.0 1.0
C A:PRO481 4.3 25.7 1.0
CA A:PRO481 4.3 24.6 1.0
O A:HOH922 4.4 42.0 1.0
CG A:GLN300 4.5 35.5 1.0
CG A:PRO481 4.5 26.3 1.0
C A:THR480 4.5 23.9 1.0
OD2 A:ASP52 4.5 30.1 1.0
CG2 A:THR480 4.6 26.6 1.0
CA A:THR480 4.6 24.2 1.0
CG A:ASP52 4.7 29.1 1.0
CA A:ASP52 4.8 30.5 1.0
N A:ASP52 4.9 30.4 1.0
N A:THR483 4.9 23.0 1.0
O A:HOH783 4.9 46.7 1.0
C A:SER482 4.9 21.7 1.0
CB A:VAL51 5.0 31.9 1.0

Reference:

Y.Zhou, K.Yan, O.G.Raimi, Q.Qin, B.Wang, C.S.Ahamefule, C.Jin, D.M.F.Van Aalten, W.Fang. Pleiotropic Function and Antifungal Target Potential of Phosphoglucose Isomerase in Aspergillus Fumigatus To Be Published.
Page generated: Fri Apr 7 15:28:24 2023

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