Sodium in PDB, part 309 (files: 12321-12360),
PDB 9icf-9j1u
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12321-12360 (PDB 9icf-9j1u).
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9icf (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and ZNCL2
Other atoms:
Zn (2);
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9icg (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dctp (1 Millimolar) and ZNCL2 (1 Millimolar)
Other atoms:
Zn (3);
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9ich (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dgtp (1 Millimolar) and ZNCL2 (1 Millimolar)
Other atoms:
Zn (3);
-
9ici (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and ZNCL2 (1 Millimolar)
Other atoms:
Zn (2);
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9icj (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna
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9ick (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Artificial Mother Liquor
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9icl (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Pyrophosphate and MNCL2
Other atoms:
Mn (2);
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9icm (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Double Stranded Dna (No 5'-Phosphate)
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9icn (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2',3'- Dideoxycytidine-5'-Triphosphate, Soaked in the Presence of Ddctp and MGCL2
Other atoms:
Mg (1);
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9ico (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex, Soaked in the Presence of Dttp and MGCL2
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9icp (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of Pyrophosphate (1 Millimolar) and MGCL2 (5 Millimolar)
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9icq (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of Datp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (2);
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9icr (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxycytidine-5'-Triphosphate, Soaked in the Presence of Dctp and MNCL2
Other atoms:
Mn (2);
-
9ics (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2',3'- Dideoxycytidine-5'-Triphosphate, Soaked in the Presence of Ddctp and MNCL2
Other atoms:
Mn (2);
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9ict (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyguanosine-5'-Triphosphate, Soaked in the Presence of Dgtp and MNCL2
Other atoms:
Mn (2);
-
9icu (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Soaked in the Presence of Dttp (1 Millimolar) and MNCL2 (5 Millimolar)
Other atoms:
Mn (1);
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9icv (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7)/Dna Complex + 2'- Deoxyadenosine-5'-Triphosphate, Soaked in the Presence of Datp and ZNCL2
Other atoms:
Zn (3);
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9icw (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna; Native Structure
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9icx (Na: 2) - Dna Polymerase Beta (Pol B) (E.C.2.7.7.7) Complexed with Six Base Pairs of Dna (Non Gapped Dna Only)
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9icy (Na: 2) - Dna Polymerase Beta (E.C.2.7.7.7) Complexed with Seven Base Pairs of Dna (Non Gapped Dna Only)
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9ife (Na: 1) - Pandda Analysis - Crystal Structure of Trypanosoma Brucei Trypanothione Reductase in Complex with Z943693514
Other atoms:
Br (5);
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9ifl (Na: 1) - Pandda Analysis - Crystal Structure of Trypanosoma Brucei Trypanothione Reductase in Complex with Z319545618
Other atoms:
Br (2);
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9igk (Na: 3) - Crystal Structure of P. Syringae Phosphinothricin Acetyltransferase PSPTO_3321
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9igl (Na: 1) - Crystal Structure of P. Syringae Phosphinothricin Acetyltransferase PSPTO_3321 in Complex with L-Phosphinothricin
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9iig (Na: 6) - Cryo-Em Structure of Hetero-Bacterioferritin SOBFR12 From Shewanella Oneidensis
Other atoms:
Fe (6);
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9ikf (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Carbon Dioxide-Bound Fully Oxidized State
Other atoms:
Zn (2);
Cu (6);
Mg (2);
Fe (4);
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9ikg (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Carbon Dioxide-Bound Fully Reduced State
Other atoms:
Cu (6);
Zn (2);
Mg (2);
Fe (4);
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9ikh (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Nitrous Oxide-Bound Fully Oxidized State
Other atoms:
Fe (4);
Mg (2);
Zn (2);
Cu (6);
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9iki (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Nitrous Oxide-Bound Fully Reduced State
Other atoms:
Mg (2);
Fe (4);
Zn (2);
Cu (6);
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9in7 (Na: 1) - True-Atomic Resolution Crystal Structure of the Closed State of the Viral Channelrhodopsin OLPVR1
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9in8 (Na: 1) - True-Atomic Resolution Crystal Structure of the Open State of the Viral Channelrhodopsin OLPVR1
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9iok (Na: 3) - Crystal Structure of Sortase E From Thermobifida Fusca
Other atoms:
Cl (2);
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9iqd (Na: 2) - Apo-Micm,Homologous of Akam, Snoal-Like Protein
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9iqp (Na: 1) - Crystal Structure of the Wuhan Sars-Cov-2 Spike Rbd (319-541) Complexed with 1P1B10 Nanobody
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9iti (Na: 1) - NAV1.7 with Mutations That Eliminate BETA1 Binding
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9iv0 (Na: 3) - Crystal Structure of Sortase E Mutant Y128F From Thermobifida Fusca
Other atoms:
Cl (2);
-
9iy7 (Na: 2) - Cryoem Structure of A Transmembrane Protein
Other atoms:
Cl (2);
-
9iyw (Na: 1) - Crystal Structure of Chimeric Ksq-at Didomain
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9j0t (Na: 3) - Crystal Structure of Sortase E Mutant - C222A From Thermobifida Fusca
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9j1u (Na: 3) - Structural Basis of the Bifunctionality of M. Salinexigens ZYF650T Glucosylglycerol Phosphorylase in Glucosylglycerol Catabolism
Page generated: Mon Dec 15 11:18:58 2025
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