Sodium in PDB, part 309 (files: 12321-12360),
PDB 9jln-9mm2
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 12321-12360 (PDB 9jln-9mm2).
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9jln (Na: 1) - Cryo-Em Structure of Human Taut in Presence of Taurine, Observed Only One Sodium Ion, Determined in An Inward-Occluded Conformation
Other atoms:
Cl (1);
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9jqb (Na: 24) - Cryo-Em Structure of Ferritin Variant R63BRTHA/E67BRTHA
Other atoms:
Br (48);
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9k72 (Na: 5) - Crystal Structure of Tsabgl Using Merged Datasets
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9k73 (Na: 3) - Crystal Structure of Tsabgl
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9k7b (Na: 1) - Cryo-Em Structure of Human Taurine Transporter Taut Bound with Taurine Molecules in An Inward-Open State in the Saposin-Disc
Other atoms:
Cl (1);
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9k8x (Na: 1) - Crystal Structure of the Calcium Indicator GCAMP6S-Brus-145 in Calcium-Bounded State
Other atoms:
Ca (4);
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9k9z (Na: 1) - Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Mosflm)
Other atoms:
Cl (2);
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9ka0 (Na: 1) - Room-Temperature Structure of Lysozyme Determined By Serial Synchrotron Crystallography (Xgandalf)
Other atoms:
Cl (2);
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9kmi (Na: 2) - Taurine Bound Mtaut
Other atoms:
Cl (1);
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9kmj (Na: 2) - Taurine Bound Htaut
Other atoms:
Cl (1);
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9kmm (Na: 2) - Iaa Bound Mtaut
Other atoms:
Cl (1);
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9kot (Na: 1) - Hewl Crystal Soaked in Buffer of PH2.0
Other atoms:
Cl (2);
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9krh (Na: 1) - Human Creatine Transporter
Other atoms:
Cl (1);
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9kuk (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Xenon-Bound Fully Oxidized State Under Aerobic Condition
Other atoms:
Zn (2);
Cu (6);
Xe (14);
Fe (4);
Mg (2);
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9kul (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Xenon-Bound Fully Oxidized State Under Anaerobic Condition
Other atoms:
Xe (14);
Fe (4);
Mg (2);
Cu (6);
Zn (2);
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9kum (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Xenon-Bound Fully Reduced State
Other atoms:
Cu (6);
Zn (2);
Mg (2);
Fe (4);
Xe (16);
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9kws (Na: 2) - D98N Mutant of A Copper-Containing Nitrite Reductase From Geobacillus Thermodenitrificans
Other atoms:
Cu (5);
Cl (1);
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9kx8 (Na: 1) - Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose
Other atoms:
Cl (2);
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9kyo (Na: 2) - Ges Bound Mtaut
Other atoms:
Cl (1);
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9l6z (Na: 5) - Crystal Structure of the L7AE Derivative Protein LS12 in Rna-Free State
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9l71 (Na: 1) - Hewl Crystal Soaked in Buffer of PH12.0
Other atoms:
Cl (2);
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9lj6 (Na: 2) - Crystal Structure of C-Terminal Rigid Fragment Containing Middle and C-Terminal Domains of the Basal Pilin Ebpb From Enterococcus Faecalis.
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9lks (Na: 2) - Crystal Structure of N-Terminal Flexible Domain of the Shaft Pilin Ebpc From Enterococcus Faecalis.
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9lmk (Na: 1) - Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Xds)
Other atoms:
Cl (2);
-
9lml (Na: 1) - Room Temperature Structure of Lysozyme By Serial Synchrotron Crystallography (Mosflm)
Other atoms:
Cl (2);
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9lnq (Na: 3) - The Hung Bound to Dna Product Embedding 4PRIMER-OCH3-Du
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9lr7 (Na: 15) - Crystal Structure of the Basal Pilin Ebpb From Enterococcus Faecalis.
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9ls8 (Na: 2) - Crystal Structure of Peptidyl-Trna Hydrolase From Enterococcus Faecium at 1.22 A
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9lty (Na: 4) - Crystal Structure of C-Terminal Stable Fragment of the Shaft Pilin Ebpc From Enterococcus Faecalis
Other atoms:
Mg (2);
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9lxl (Na: 1) - Crystal Structure of GH29 Family Alpha-L-Fucosidase From Fusarium Proliferatum LE1
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9m56 (Na: 2) - Bovine Heart Cytochrome C Oxidase in the Fully Reduced State
Other atoms:
Mg (2);
Fe (4);
Cu (6);
Zn (2);
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9mbe (Na: 4) - Neutron Crystal Structure of Human MTH1(G2K/C87A/C104S Mutant) in Complex with 8-Oxo-Dgtp
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9mbf (Na: 4) - Neutron Crystal Structure of Human MTH1(G2K/C87A/C104S Mutant) in Complex with 2-Oxo-Datp
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9mbg (Na: 5) - 8-Oxo-Dgtp Hydrolysis in Human MTH1(G2K Mutant) Crystal Using MN2+: the Es Complex
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9mbh (Na: 4) - 8-Oxo-Dgtp Hydrolysis in Human MTH1(G2K Mutant) Crystal Using MN2+: the Es-3M Complex
Other atoms:
Mn (6);
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9mbk (Na: 4) - 2-Oxo-Datp Hydrolysis in Human MTH1(G2K Mutant) Crystal Using MN2+: the Es Complex
-
9mbl (Na: 4) - 2-Oxo-Datp Hydrolysis in Human MTH1(G2K Mutant) Crystal Using MN2+: the Es-2M Complex
Other atoms:
Mn (4);
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9me8 (Na: 1) - Co-Crystal Structure of Maltose Binding Protein (Mbp)-Human SENP3 Fusion Protein in Complex with PELP1 Peptide
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9mg3 (Na: 10) - Structure of Kluyveromyces Lactis Mrna Cap (Guanine-N7) Methyltransferase, ABD1, in Complex with Sinefungin and Gtp
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9mm2 (Na: 3) - Crystal Structure of Bacterial Pectin Methylesterase PMEC5 From B. Fibrisolvens D1T
Other atoms:
Mg (3);
Page generated: Mon Aug 18 17:18:11 2025
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