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Sodium in PDB 9kx8: Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose

Enzymatic activity of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose

All present enzymatic activity of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose:
3.2.2.22;

Protein crystallography data

The structure of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose, PDB code: 9kx8 was solved by A.Saeed, C.Betzel, H.Brognaro, P.Rajaiah Prabhu, B.Alves Franca, B.Khaliq, S.Mehmood, A.Akrem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.77 / 2.28
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 107.859, 107.859, 311.386, 90, 90, 120
R / Rfree (%) 21 / 23.1

Other elements in 9kx8:

The structure of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose (pdb code 9kx8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose, PDB code: 9kx8:

Sodium binding site 1 out of 1 in 9kx8

Go back to Sodium Binding Sites List in 9kx8
Sodium binding site 1 out of 1 in the Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na310

b:100.1
occ:1.00
CB B:CYS5 3.6 101.6 1.0
O A:CYS247 3.6 104.4 1.0
CA B:CYS5 4.3 103.0 1.0
CB A:CYS247 4.5 96.1 1.0
C A:CYS247 4.6 97.3 1.0
CA A:CYS247 4.7 97.7 1.0
SG B:CYS5 4.9 100.2 1.0

Reference:

A.Saeed, C.Betzel, H.Brognaro, P.Rajaiah Prabhu, B.Alves Franca, B.Khaliq, S.Mehmood, A.Akrem. Mistletoe Lectin I From Viscum Album Complexed with Epimer Form of Lactose To Be Published.
Page generated: Mon Aug 18 17:20:34 2025

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