Sodium in PDB 9krh: Human Creatine Transporter

The structure of Human Creatine Transporter also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Human Creatine Transporter (pdb code 9krh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Human Creatine Transporter, PDB code: 9krh:

Sodium binding site 1 out of 1 in the Human Creatine Transporter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Human Creatine Transporter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na703 b:69.5 occ:1.00 OG A:SER316 2.3 62.0 1.0 OD1 A:ASN74 2.3 60.8 1.0 O A:SER316 2.3 62.0 1.0 O A:ALA69 2.4 77.0 1.0 CG A:ASN74 2.8 60.8 1.0 ND2 A:ASN74 3.0 60.8 1.0 C A:SER316 3.1 62.0 1.0 CA A:SER316 3.2 62.0 1.0 CB A:SER316 3.2 62.0 1.0 O9 A:CRN701 3.3 71.1 1.0 O8 A:CRN701 3.3 71.1 1.0 C A:ALA69 3.6 77.0 1.0 C7 A:CRN701 3.7 71.1 1.0 OD1 A:ASN348 4.0 65.5 1.0 N A:ASN74 4.0 60.8 1.0 CB A:ASN74 4.1 60.8 1.0 N A:GLY71 4.3 66.4 1.0 C A:GLY73 4.3 59.1 1.0 N A:TYR317 4.3 63.3 1.0 CA A:VAL70 4.3 70.7 1.0 CG A:ASN348 4.4 65.5 1.0 N A:VAL70 4.4 70.7 1.0 CA A:ASN74 4.5 60.8 1.0 CA A:GLY73 4.5 59.1 1.0 N A:SER316 4.6 62.0 1.0 CA A:ALA69 4.7 77.0 1.0 CB A:ASN348 4.7 65.5 1.0 C A:VAL70 4.8 70.7 1.0 O A:GLY73 4.9 59.1 1.0 CL A:CL702 4.9 68.4 1.0 N A:GLY73 5.0 59.1 1.0 CA A:TYR317 5.0 63.3 1.0

J.Chen, Y.Zhang, N.Chen, J.Ge, J.Yu. Transport and Inhibition Mechanisms of Human Creatine Transporter. Cell Discov V. 11 43 2025.
ISSN: ESSN 2056-5968
PubMed: 40325013
DOI: 10.1038/S41421-025-00801-4