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Sodium in PDB, part 194 (files: 7721-7760), PDB 6dmi-6e8s

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 7721-7760 (PDB 6dmi-6e8s).
  1. 6dmi (Na: 2) - A Multiconformer Ligand Model of 5T5 Bound to Bace-1
    Other atoms: F (6); Cl (3);
  2. 6dq0 (Na: 1) - Sfgfp D133 Mutated to 4-Nitro-L-Phenylalanine
  3. 6dq1 (Na: 1) - Sfgfp N149 Mutated to 4-Nitro-L-Phenylalanine
  4. 6ds2 (Na: 10) - Crystal Structure of Ni(II)-Bound Human Calprotectin
    Other atoms: Ni (6);
  5. 6dtd (Na: 2) - High-Resolution Crystal Structure of CAS13B From Prevotella Buccae
    Other atoms: Cl (2);
  6. 6dv0 (Na: 1) - Hiv-1 Wild Type Protease with Grl-02815A, A Thiochroman Heterocycle with (S)-Boc-Amine Functionality As the P2 Ligand
    Other atoms: Cl (2);
  7. 6dv4 (Na: 1) - Hiv-1 Wild Type Protease with Grl-04315A, A Tetrahydronaphthalene Carboxamide with (R)-Boc-Amine and (S)-Hydroxyl Functionalities As the P2 Ligand
    Other atoms: Cl (2);
  8. 6dw2 (Na: 2) - Structure of the 6078 Antibody Fab Fragment Bound to A Staphylococcus Aureus Wall Techoic Acid Analog
  9. 6dw4 (Na: 1) - SAMHD1 Bound to Cladribine-Tp in the Catalytic Pocket and Allosteric Pocket
    Other atoms: Mg (8);
  10. 6dw5 (Na: 4) - SAMHD1 Bound to Gemcitabine-Tp in the Catalytic Pocket
    Other atoms: F (8); Ni (1); Mg (10);
  11. 6dw7 (Na: 3) - SAMHD1 Without Catalytic Nucleotides
    Other atoms: Mg (4);
  12. 6dwd (Na: 23) - SAMHD1 Bound to Clofarabine-Tp in the Catalytic Pocket and Allosteric Pocket
    Other atoms: F (8); Mg (10);
  13. 6dwh (Na: 8) - Crystal Structure of Complex of Bbki and Bovine Trypsin
    Other atoms: Cl (2);
  14. 6dwj (Na: 17) - SAMHD1 Bound to Vidarabine-Tp in the Catalytic Pocket
    Other atoms: Mg (10);
  15. 6dwk (Na: 23) - SAMHD1 Bound to Fludarabine-Tp in the Catalytic Pocket
    Other atoms: F (4); Mg (9);
  16. 6dx0 (Na: 1) - Hermes Transposase Deletion Dimer Complex with (A/T) Dna
  17. 6dxu (Na: 8) - Crystal Structure of Parabacteroides Merdae Beta-Glucuronidase (Gus)
  18. 6dz4 (Na: 2) - Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.
    Other atoms: Cl (8);
  19. 6dzd (Na: 1) - Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih
    Other atoms: K (1); Zn (2); Cl (1);
  20. 6e04 (Na: 1) - Sperm Whale Myoglobin 1-Nitrosopropane
    Other atoms: Fe (1);
  21. 6e1r (Na: 3) - Crystal Structure of the Acinetobacter Phage VB_APIP_P1 Tailspike Protein
    Other atoms: Cl (3);
  22. 6e3r (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA As the Template Base in A 1-Nucleotide Gapped Dna
  23. 6e3v (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA in the Template Base Paired with Incoming Non-Hydrolyzable Ttp
    Other atoms: Mg (2);
  24. 6e3w (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA in the Template Base Paired with Incoming Non-Hydrolyzable Gtp
    Other atoms: Mg (2);
  25. 6e3x (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA in the Template Base Paired with Incoming Non-Hydrolyzable Atp
    Other atoms: Mg (2);
  26. 6e57 (Na: 2) - Bacteroides Ovatus Mixed-Linkage Glucan Utilization Locus (Mlgul) Sgbp-B in Complex with Mixed-Linkage Heptasaccharide
  27. 6e5b (Na: 12) - Human Immunoproteasome 20S Particle in Complex with Compound 1
  28. 6e6a (Na: 2) - Triclinic Crystal Form of Inca G144A Point Mutant
  29. 6e6g (Na: 1) - Kras G13D Bound to Gdp (K13GDP)
    Other atoms: Ca (1);
  30. 6e6p (Na: 1) - Hras G13D Bound to Gppnhp (Ha,B,C13GNP)
    Other atoms: Mg (3); Ca (2);
  31. 6e7j (Na: 2) - Hiv-1 Wild Type Protease with Grl-042-17A, 3-Phenylhexahydro-2H- Cyclopenta[D]Oxazol-2-One with A Bicyclic Oxazolidinone Scaffold As the P2 Ligand
    Other atoms: Cl (4);
  32. 6e7r (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-4
    Other atoms: Cl (16);
  33. 6e7s (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-5
    Other atoms: Cl (12);
  34. 6e7t (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-6
    Other atoms: Cl (15);
  35. 6e7u (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-31
    Other atoms: Cl (16);
  36. 6e7v (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-88
    Other atoms: Cl (15);
  37. 6e7w (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-115
    Other atoms: Cl (15);
  38. 6e7x (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-97
    Other atoms: Cl (13);
  39. 6e8f (Na: 1) - Crystal Structure of Human Protocadherin-15 EC3-5 CD2-1
    Other atoms: Ca (13);
  40. 6e8s (Na: 4) - Structure of the Imango-III Aptamer Bound to TO1-Biotin
    Other atoms: Mg (2); K (2);
Page generated: Sat Sep 25 14:50:25 2021

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