Atomistry » Sodium » PDB 6dw2-6eer
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Sodium in PDB, part 194 (files: 7721-7760), PDB 6dw2-6eer

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 7721-7760 (PDB 6dw2-6eer).
  1. 6dw2 (Na: 2) - Structure of the 6078 Antibody Fab Fragment Bound to A Staphylococcus Aureus Wall Techoic Acid Analog
  2. 6dw4 (Na: 1) - SAMHD1 Bound to Cladribine-Tp in the Catalytic Pocket and Allosteric Pocket
    Other atoms: Mg (8);
  3. 6dw5 (Na: 4) - SAMHD1 Bound to Gemcitabine-Tp in the Catalytic Pocket
    Other atoms: F (8); Ni (1); Mg (10);
  4. 6dw7 (Na: 3) - SAMHD1 Without Catalytic Nucleotides
    Other atoms: Mg (4);
  5. 6dwd (Na: 23) - SAMHD1 Bound to Clofarabine-Tp in the Catalytic Pocket and Allosteric Pocket
    Other atoms: F (8); Mg (10);
  6. 6dwh (Na: 8) - Crystal Structure of Complex of Bbki and Bovine Trypsin
    Other atoms: Cl (2);
  7. 6dwj (Na: 17) - SAMHD1 Bound to Vidarabine-Tp in the Catalytic Pocket
    Other atoms: Mg (10);
  8. 6dwk (Na: 23) - SAMHD1 Bound to Fludarabine-Tp in the Catalytic Pocket
    Other atoms: F (4); Mg (9);
  9. 6dx0 (Na: 1) - Hermes Transposase Deletion Dimer Complex with (A/T) Dna
  10. 6dxu (Na: 8) - Crystal Structure of Parabacteroides Merdae Beta-Glucuronidase (Gus)
  11. 6dz4 (Na: 2) - Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.
    Other atoms: Cl (8);
  12. 6dzd (Na: 1) - Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih
    Other atoms: K (1); Zn (2); Cl (1);
  13. 6e04 (Na: 1) - Sperm Whale Myoglobin 1-Nitrosopropane
    Other atoms: Fe (1);
  14. 6e1r (Na: 3) - Crystal Structure of the Acinetobacter Phage VB_APIP_P1 Tailspike Protein
    Other atoms: Cl (3);
  15. 6e3r (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA As the Template Base in A 1-Nucleotide Gapped Dna
  16. 6e3v (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA in the Template Base Paired with Incoming Non-Hydrolyzable Ttp
    Other atoms: Mg (2);
  17. 6e3w (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA in the Template Base Paired with Incoming Non-Hydrolyzable Gtp
    Other atoms: Mg (2);
  18. 6e3x (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA in the Template Base Paired with Incoming Non-Hydrolyzable Atp
    Other atoms: Mg (2);
  19. 6e57 (Na: 2) - Bacteroides Ovatus Mixed-Linkage Glucan Utilization Locus (Mlgul) Sgbp-B in Complex with Mixed-Linkage Heptasaccharide
  20. 6e5b (Na: 12) - Human Immunoproteasome 20S Particle in Complex with Compound 1
  21. 6e6a (Na: 2) - Triclinic Crystal Form of Inca G144A Point Mutant
  22. 6e6g (Na: 1) - Kras G13D Bound to Gdp (K13GDP)
    Other atoms: Ca (1);
  23. 6e6p (Na: 1) - Hras G13D Bound to Gppnhp (Ha,B,C13GNP)
    Other atoms: Mg (3); Ca (2);
  24. 6e7j (Na: 2) - Hiv-1 Wild Type Protease with Grl-042-17A, 3-Phenylhexahydro-2H- Cyclopenta[D]Oxazol-2-One with A Bicyclic Oxazolidinone Scaffold As the P2 Ligand
    Other atoms: Cl (4);
  25. 6e7r (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-4
    Other atoms: Cl (16);
  26. 6e7s (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-5
    Other atoms: Cl (12);
  27. 6e7t (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-6
    Other atoms: Cl (15);
  28. 6e7u (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-31
    Other atoms: Cl (16);
  29. 6e7v (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-88
    Other atoms: Cl (15);
  30. 6e7w (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-115
    Other atoms: Cl (15);
  31. 6e7x (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-97
    Other atoms: Cl (13);
  32. 6e8f (Na: 1) - Crystal Structure of Human Protocadherin-15 EC3-5 CD2-1
    Other atoms: Ca (13);
  33. 6e8s (Na: 4) - Structure of the Imango-III Aptamer Bound to TO1-Biotin
    Other atoms: Mg (2); K (2);
  34. 6e8t (Na: 1) - Structure of the Mango-III (A10U) Aptamer Bound to TO1-Biotin
    Other atoms: K (4);
  35. 6e8u (Na: 2) - Structure of the Mango-III (A10U) Aptamer Bound to TO1-Biotin
    Other atoms: Mg (5); K (1);
  36. 6e9a (Na: 2) - Hiv-1 Wild Type Protease with Grl-034-17A, (3AS, 5R, 6AR)-2-Oxohexahyd Cyclopenta[D]-5-Oxazolyl Urethane with A Bicyclic Oxazolidinone Scaff As the P2 Ligand
    Other atoms: Cl (2);
  37. 6ebn (Na: 4) - Crystal Structure of Psilocybe Cubensis Noncanonical Aromatic Amino Acid Decarboxylase
  38. 6ed1 (Na: 4) - Bacteroides Dorei Beta-Glucuronidase
  39. 6eep (Na: 2) - Crystal Structure of Ribose-5-Phosphate Isomerase From Legionella Pneumophila
  40. 6eer (Na: 4) - Structure of Glycine-Bound Goxa From Pseudoalteromonas Luteoviolacea
    Other atoms: Mg (4);
Page generated: Wed Nov 4 05:36:55 2020

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