Sodium in PDB, part 194 (files: 7721-7760),
PDB 6dmi-6e8s
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 7721-7760 (PDB 6dmi-6e8s).
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6dmi (Na: 2) - A Multiconformer Ligand Model of 5T5 Bound to Bace-1
Other atoms:
F (6);
Cl (3);
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6dq0 (Na: 1) - Sfgfp D133 Mutated to 4-Nitro-L-Phenylalanine
-
6dq1 (Na: 1) - Sfgfp N149 Mutated to 4-Nitro-L-Phenylalanine
-
6ds2 (Na: 10) - Crystal Structure of Ni(II)-Bound Human Calprotectin
Other atoms:
Ni (6);
-
6dtd (Na: 2) - High-Resolution Crystal Structure of CAS13B From Prevotella Buccae
Other atoms:
Cl (2);
-
6dv0 (Na: 1) - Hiv-1 Wild Type Protease with Grl-02815A, A Thiochroman Heterocycle with (S)-Boc-Amine Functionality As the P2 Ligand
Other atoms:
Cl (2);
-
6dv4 (Na: 1) - Hiv-1 Wild Type Protease with Grl-04315A, A Tetrahydronaphthalene Carboxamide with (R)-Boc-Amine and (S)-Hydroxyl Functionalities As the P2 Ligand
Other atoms:
Cl (2);
-
6dw2 (Na: 2) - Structure of the 6078 Antibody Fab Fragment Bound to A Staphylococcus Aureus Wall Techoic Acid Analog
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6dw4 (Na: 1) - SAMHD1 Bound to Cladribine-Tp in the Catalytic Pocket and Allosteric Pocket
Other atoms:
Mg (8);
-
6dw5 (Na: 4) - SAMHD1 Bound to Gemcitabine-Tp in the Catalytic Pocket
Other atoms:
F (8);
Ni (1);
Mg (10);
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6dw7 (Na: 3) - SAMHD1 Without Catalytic Nucleotides
Other atoms:
Mg (4);
-
6dwd (Na: 23) - SAMHD1 Bound to Clofarabine-Tp in the Catalytic Pocket and Allosteric Pocket
Other atoms:
F (8);
Mg (10);
-
6dwh (Na: 8) - Crystal Structure of Complex of Bbki and Bovine Trypsin
Other atoms:
Cl (2);
-
6dwj (Na: 17) - SAMHD1 Bound to Vidarabine-Tp in the Catalytic Pocket
Other atoms:
Mg (10);
-
6dwk (Na: 23) - SAMHD1 Bound to Fludarabine-Tp in the Catalytic Pocket
Other atoms:
F (4);
Mg (9);
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6dx0 (Na: 1) - Hermes Transposase Deletion Dimer Complex with (A/T) Dna
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6dxu (Na: 8) - Crystal Structure of Parabacteroides Merdae Beta-Glucuronidase (Gus)
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6dz4 (Na: 2) - Crystal Structure of Salmonella Typhimurium Tryptophan Synthase with Sodium Ion at the Metal Coordination Site and [3-Hydroxy-2-Methyl-5- Phosphonooxymethyl-Pyridin-4-Ylmethyl]-Serine (Pls) at the Beta-Site.
Other atoms:
Cl (8);
-
6dzd (Na: 1) - Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih
Other atoms:
K (1);
Zn (2);
Cl (1);
-
6e04 (Na: 1) - Sperm Whale Myoglobin 1-Nitrosopropane
Other atoms:
Fe (1);
-
6e1r (Na: 3) - Crystal Structure of the Acinetobacter Phage VB_APIP_P1 Tailspike Protein
Other atoms:
Cl (3);
-
6e3r (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA As the Template Base in A 1-Nucleotide Gapped Dna
-
6e3v (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA in the Template Base Paired with Incoming Non-Hydrolyzable Ttp
Other atoms:
Mg (2);
-
6e3w (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA in the Template Base Paired with Incoming Non-Hydrolyzable Gtp
Other atoms:
Mg (2);
-
6e3x (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with 8OA in the Template Base Paired with Incoming Non-Hydrolyzable Atp
Other atoms:
Mg (2);
-
6e57 (Na: 2) - Bacteroides Ovatus Mixed-Linkage Glucan Utilization Locus (Mlgul) Sgbp-B in Complex with Mixed-Linkage Heptasaccharide
-
6e5b (Na: 12) - Human Immunoproteasome 20S Particle in Complex with Compound 1
-
6e6a (Na: 2) - Triclinic Crystal Form of Inca G144A Point Mutant
-
6e6g (Na: 1) - Kras G13D Bound to Gdp (K13GDP)
Other atoms:
Ca (1);
-
6e6p (Na: 1) - Hras G13D Bound to Gppnhp (Ha,B,C13GNP)
Other atoms:
Mg (3);
Ca (2);
-
6e7j (Na: 2) - Hiv-1 Wild Type Protease with Grl-042-17A, 3-Phenylhexahydro-2H- Cyclopenta[D]Oxazol-2-One with A Bicyclic Oxazolidinone Scaffold As the P2 Ligand
Other atoms:
Cl (4);
-
6e7r (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-4
Other atoms:
Cl (16);
-
6e7s (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-5
Other atoms:
Cl (12);
-
6e7t (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-6
Other atoms:
Cl (15);
-
6e7u (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-31
Other atoms:
Cl (16);
-
6e7v (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-88
Other atoms:
Cl (15);
-
6e7w (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-115
Other atoms:
Cl (15);
-
6e7x (Na: 2) - Heterodimer of the GLUN1B-GLUN2B Nmda Receptor Amino-Terminal Domains Bound to Allosteric Inhibitor 93-97
Other atoms:
Cl (13);
-
6e8f (Na: 1) - Crystal Structure of Human Protocadherin-15 EC3-5 CD2-1
Other atoms:
Ca (13);
-
6e8s (Na: 4) - Structure of the Imango-III Aptamer Bound to TO1-Biotin
Other atoms:
Mg (2);
K (2);
Page generated: Thu Dec 28 11:26:05 2023
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