Atomistry » Sodium » PDB 6dmi-6e8s » 6e04
Atomistry »
  Sodium »
    PDB 6dmi-6e8s »
      6e04 »

Sodium in PDB 6e04: Sperm Whale Myoglobin 1-Nitrosopropane

Protein crystallography data

The structure of Sperm Whale Myoglobin 1-Nitrosopropane, PDB code: 6e04 was solved by V.E.Herrera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.34 / 2.00
Space group P 6
Cell size a, b, c (Å), α, β, γ (°) 90.470, 90.470, 45.341, 90.00, 90.00, 120.00
R / Rfree (%) 17.3 / 20.5

Other elements in 6e04:

The structure of Sperm Whale Myoglobin 1-Nitrosopropane also contains other interesting chemical elements:

Iron (Fe) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Sperm Whale Myoglobin 1-Nitrosopropane (pdb code 6e04). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sperm Whale Myoglobin 1-Nitrosopropane, PDB code: 6e04:

Sodium binding site 1 out of 1 in 6e04

Go back to Sodium Binding Sites List in 6e04
Sodium binding site 1 out of 1 in the Sperm Whale Myoglobin 1-Nitrosopropane


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sperm Whale Myoglobin 1-Nitrosopropane within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na207

b:26.5
occ:0.30
O A:HOH402 2.7 21.3 1.0
CB A:ALA19 4.0 12.1 1.0
O A:HOH306 4.3 22.7 1.0
O A:ALA19 4.3 10.9 1.0
CB A:ASP20 4.5 14.0 1.0
C A:ALA19 4.6 12.2 1.0
CA A:ALA19 4.9 12.2 1.0

Reference:

V.E.Herrera, V.E.Herrera. N/A N/A.
Page generated: Tue Dec 15 12:09:14 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy