Sodium in PDB 6dq0: Sfgfp D133 Mutated to 4-Nitro-L-Phenylalanine

The structure of Sfgfp D133 Mutated to 4-Nitro-L-Phenylalanine, PDB code: 6dq0 was solved by C.M.Phillips-Piro, N.Maurici, B.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.86 / 2.05
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	97.720, 97.720, 154.872, 90.00, 90.00, 120.00
R / Rfree (%)	18.5 / 21.9

The binding sites of Sodium atom in the Sfgfp D133 Mutated to 4-Nitro-L-Phenylalanine (pdb code 6dq0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Sfgfp D133 Mutated to 4-Nitro-L-Phenylalanine, PDB code: 6dq0:

Sodium binding site 1 out of 1 in the Sfgfp D133 Mutated to 4-Nitro-L-Phenylalanine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Sfgfp D133 Mutated to 4-Nitro-L-Phenylalanine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na304 b:45.4 occ:1.00 N A:GLY116 3.0 32.1 1.0 O A:PHE114 3.3 32.1 1.0 C A:PHE114 3.8 30.0 1.0 CA A:GLY116 3.8 31.4 1.0 CA A:GLU115 3.9 28.1 1.0 C A:GLU115 3.9 38.0 1.0 O A:GLY116 4.0 35.2 1.0 O A:HOH472 4.1 35.2 1.0 N A:GLU115 4.1 28.5 1.0 CB A:PHE114 4.4 29.4 1.0 C A:GLY116 4.4 35.9 1.0 CA A:PHE114 4.7 28.8 1.0 O A:HOH535 4.8 54.4 1.0

N.Maurici, N.Savidge, B.U.Lee, S.H.Brewer, C.M.Phillips-Piro. Crystal Structures of Green Fluorescent Protein with the Unnatural Amino Acid 4-Nitro-L-Phenylalanine. Acta Crystallogr F Struct V. 74 650 2018BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 30279317
DOI: 10.1107/S2053230X1801169X