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Sodium in PDB, part 189 (files: 7521-7560), PDB 6bhd-6c2h

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 7521-7560 (PDB 6bhd-6c2h).
  1. 6bhd (Na: 1) - Crystal Structure of SETDB1 with A Modified H3 Peptide
  2. 6bhy (Na: 6) - Mouse Immunoglobulin G 2C Fc Fragment with Single Glcnac
  3. 6bk7 (Na: 2) - 1.83 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-404) of Elongation Factor G From Enterococcus Faecalis
  4. 6bkg (Na: 1) - Human Ligiv Catalytic Domain with Bound Dna-Adenylate Intermediate in Closed Conformation
    Other atoms: Cl (2);
  5. 6bmi (Na: 4) - Crystal Structure of Gltph R397C in Complex with L-Serine
  6. 6bni (Na: 1) - Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysine and Adenosine
  7. 6bo1 (Na: 1) - Mono-Adduct Formed After 3 Days in the Reaction of Dichlorido(1,3- Dimethylbenzimidazol-2-Ylidene)(ETA6-P-Cymene)Ruthenium(II) with Hewl
    Other atoms: Ru (1); Cl (2);
  8. 6bo2 (Na: 1) - Adducts Formed After 1 Month in the Reaction of Dichlorido(1,3- Dimethylbenzimidazol-2-Ylidene)(ETA6-P-Cymene)Ruthenium(II) with Hewl
    Other atoms: Ru (3); Cl (5);
  9. 6boc (Na: 1) - Influenza A M2 Transmembrane Domain Bound to Rimantadine in the Inward(Open) Conformation
    Other atoms: Cl (1);
  10. 6bq9 (Na: 1) - 2.55 Angstrom Resolution Crystal Structure of N-Terminal Fragment (Residues 1-493) of Dna Topoisomerase IV Subunit A From Pseudomonas Putida
    Other atoms: Cl (2);
  11. 6bqo (Na: 1) - Structure of A Dual Topology Fluoride Channel with Monobody S8
    Other atoms: F (2);
  12. 6brc (Na: 1) - Crystal Structure of the Human CAMKK2B in Complex with AP26113-Analog (Alk-in-1)
    Other atoms: Cl (2);
  13. 6bre (Na: 1) - Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.
    Other atoms: Cd (10); Cl (6);
  14. 6bri (Na: 2) - Rhcc with Unreduced and Reduced Mercury Complexes
    Other atoms: Hg (13); K (6); I (17);
  15. 6bte (Na: 2) - Dna Polymerase Beta I260Q Binary Complex
    Other atoms: I (2); Cl (1);
  16. 6btf (Na: 3) - Dna Polymerase Beta I260Q Ternary Complex
    Other atoms: Mg (1);
  17. 6buq (Na: 1) - Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with Barbituric Acid
    Other atoms: Ca (4); Cl (2);
  18. 6buv (Na: 1) - Structure of Mycobacterium Tuberculosis Nadd in Complex with Inhibitor [(1~{R},2~{R},5~{S})-5-Methyl-2-Propan-2-Yl-Cyclohexyl] 2-[3-Methyl- 2-(Phenoxymethyl)Benzimidazol-1-Yl]Ethanoate
    Other atoms: Cl (5);
  19. 6bve (Na: 2) - Triosephosphate Isomerase of Synechocystis in Complex with 2- Phosphoglycolic Acid
  20. 6bvi (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: Mg (1); Cl (2);
  21. 6bvj (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: Mg (1); Cl (2);
  22. 6bvk (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: Mg (1); Cl (1);
  23. 6bvl (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: Mg (1); Cl (1);
  24. 6bvm (Na: 1) - Ras:Sos:Ras in Complex with A Small Molecule Activator
    Other atoms: Mg (1); Cl (1);
  25. 6bwi (Na: 5) - 3.7 Angstrom Cryoem Structure of Full Length Human TRPM4
  26. 6bwl (Na: 1) - X-Ray Structure of Pal From Bacillus Thuringiensis
    Other atoms: Cl (2);
  27. 6bx4 (Na: 1) - The Crystal Structure of Fluoride Channel Fluc EC2 with Monobody S9
    Other atoms: F (4);
  28. 6bx5 (Na: 1) - The Crystal Structure of Fluoride Channel Fluc EC2 with Monobody S12
    Other atoms: F (4);
  29. 6bxr (Na: 3) - Crystal Structure of Toxoplasma Gondii Mitochondrial Association Factor 1 B (MAF1B)
    Other atoms: Br (11);
  30. 6bz2 (Na: 1) - Crystal Structure of Wild-Type Hiv-1 Protease with A Novel Hiv-1 Inhibitor Grl-14213A of 6-5-5-Ring Fused Crown-Like Tetrahydropyranofuran As the P2-Ligand, A Cyclopropylaminobenzothiazole As the P2'-Ligand and 3,5- Difluorophenylmethyl As the P1-Ligand
    Other atoms: F (4); Cl (2);
  31. 6bzx (Na: 1) - Structure of the Artificial Complex Alpha-Rep/Octarellin V.1 Crystallized By Counter Diffusion in A Capillary
  32. 6c01 (Na: 2) - Human Ectonucleotide Pyrophosphatase / Phosphodiesterase 3 (ENPP3, NPP3, CD203C)
    Other atoms: Zn (4); Ca (2);
  33. 6c02 (Na: 2) - Human Ectonucleotide Pyrophosphatase / Phosphodiesterase 3 (ENPP3, NPP3, CD203C), Inactive (T205A), N594S, with Alpha,Beta-Methylene-Atp (Ampcpp)
    Other atoms: Zn (4); Ca (2); Cl (3);
  34. 6c0l (Na: 1) - Crystal Structure of Hiv-1 E138K Mutant Reverse Transcriptase in Complex with Non-Nucleoside Inhibitor K-5A2
    Other atoms: Mg (1);
  35. 6c12 (Na: 2) - Sdha-Sdhe Complex
  36. 6c15 (Na: 1) - CD1C in Complex with Phosphatidylcholine
  37. 6c1k (Na: 4) - Hypopp Mutant with LIGAND1
  38. 6c1m (Na: 4) - Navab Normopp Mutant
  39. 6c1r (Na: 1) - Crystal Structure of Human C5A Receptor in Complex with An Orthosteric Antagonist PMX53 and An Allosteric Antagonist Avacopan
    Other atoms: F (4);
  40. 6c2h (Na: 1) - Crystal Structures of Cystathionine Beta-Synthase From Saccharomyces Cerevisiae: the Structure of the Catalytic Core
    Other atoms: Ca (1); Cl (1);
Page generated: Tue Dec 1 10:45:37 2020

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