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Sodium in PDB 6bre: Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.

Enzymatic activity of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.

All present enzymatic activity of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source., PDB code: 6bre was solved by J.Sakon, P.Caviness, T.Jack, J.B.Pickens, P.Reed, C.Ruth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.74 / 1.86
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 81.410, 81.410, 36.390, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 24.8

Other elements in 6bre:

The structure of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. also contains other interesting chemical elements:

Cadmium (Cd) 10 atoms
Chlorine (Cl) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. (pdb code 6bre). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source., PDB code: 6bre:

Sodium binding site 1 out of 1 in 6bre

Go back to Sodium Binding Sites List in 6bre
Sodium binding site 1 out of 1 in the Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hen Egg-White Lysozyme Cocrystallized with Cadmium Sulphate Using Cukalpha Source. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:24.1
occ:1.00
 O A:SER60 2.4 19.0 1.0
OG A:SER72 2.4 25.0 1.0
O A:ARG73 2.5 25.0 1.0
O A:CYS64 2.5 18.6 1.0
CL A:CL217 2.7 35.7 1.0
O A:HOH397 2.8 17.9 1.0
CB A:SER72 3.2 25.1 1.0
C A:SER60 3.5 17.6 1.0
C A:ARG73 3.5 24.7 1.0
C A:CYS64 3.6 18.0 1.0
N A:ARG73 3.8 26.6 1.0
CA A:ASN65 4.0 19.3 1.0
C A:SER72 4.0 27.4 1.0
CD A:CD204 4.0 32.3 0.5
CA A:SER60 4.2 16.5 1.0
N A:ASN65 4.2 18.1 1.0
CA A:SER72 4.2 25.9 1.0
CA A:ARG73 4.3 26.2 1.0
CB A:SER60 4.4 14.4 1.0
C A:ARG61 4.4 20.8 1.0
N A:ASN74 4.4 23.3 1.0
O A:ARG61 4.5 22.4 1.0
N A:CYS64 4.5 17.1 1.0
O A:SER72 4.6 27.2 1.0
N A:ARG61 4.6 18.8 1.0
CB A:THR69 4.6 21.8 1.0
CA A:ASN74 4.6 22.2 1.0
CA A:CYS64 4.7 18.2 1.0
O A:HOH422 4.7 28.9 1.0
CA A:ARG61 4.7 21.4 1.0
N A:TRP62 4.8 20.4 1.0
CB A:ASN74 4.8 22.2 1.0
O A:THR69 4.8 24.0 1.0
N A:ASP66 4.9 16.4 1.0
CB A:ASN65 4.9 19.6 1.0
OD1 A:ASN65 5.0 26.9 1.0
C A:ASN65 5.0 16.8 1.0

Reference:

J.Sakon, P.Caviness, T.Jack, J.B.Pickens, P.Reed, C.Ruth. Hen Egg-White Lysozyme (Hewl) Cocrystallized with Cadmium Sulphate. To Be Published.
Page generated: Tue Dec 15 11:59:37 2020

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