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Sodium in PDB 6buq: Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with Barbituric Acid

Enzymatic activity of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with Barbituric Acid

All present enzymatic activity of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with Barbituric Acid:
3.5.2.15;

Protein crystallography data

The structure of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with Barbituric Acid, PDB code: 6buq was solved by K.Shi, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.71 / 1.88
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 81.050, 89.770, 198.710, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 18.2

Other elements in 6buq:

The structure of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with Barbituric Acid also contains other interesting chemical elements:

Calcium (Ca) 4 atoms
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with Barbituric Acid (pdb code 6buq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with Barbituric Acid, PDB code: 6buq:

Sodium binding site 1 out of 1 in 6buq

Go back to Sodium Binding Sites List in 6buq
Sodium binding site 1 out of 1 in the Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with Barbituric Acid


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with Barbituric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:30.8
occ:1.00
OE1 A:GLN57 1.9 38.3 1.0
OE1 B:GLN57 2.0 36.3 1.0
HG2 B:GLN57 2.2 30.7 1.0
HG2 A:GLN57 2.5 28.7 1.0
CD B:GLN57 2.7 31.3 1.0
CD A:GLN57 2.7 30.5 1.0
CG B:GLN57 2.8 25.6 1.0
CG A:GLN57 2.9 23.9 1.0
HD1 A:PHE54 3.0 23.4 1.0
HB3 A:GLN57 3.0 25.6 1.0
HD1 B:PHE54 3.0 25.2 1.0
HB3 B:GLN57 3.1 27.3 1.0
HE1 B:PHE54 3.3 26.8 1.0
HE1 A:PHE54 3.3 25.1 1.0
CB A:GLN57 3.5 21.3 1.0
CB B:GLN57 3.5 22.8 1.0
HG3 B:GLN57 3.6 30.7 1.0
CD1 A:PHE54 3.7 19.5 1.0
CD1 B:PHE54 3.7 21.0 1.0
HG3 A:GLN57 3.8 28.7 1.0
CE1 B:PHE54 3.9 22.3 1.0
CE1 A:PHE54 3.9 20.9 1.0
HG A:SER58 3.9 26.5 1.0
HG B:SER58 3.9 26.1 1.0
HA B:PHE54 4.0 24.2 1.0
NE2 A:GLN57 4.0 33.8 1.0
HA A:PHE54 4.0 23.8 1.0
NE2 B:GLN57 4.0 32.9 1.0
HB2 A:GLN57 4.0 25.6 1.0
HB2 B:GLN57 4.1 27.3 1.0
SD A:MET61 4.2 30.9 0.5
SD B:MET61 4.2 31.0 0.5
OG A:SER58 4.3 22.1 1.0
HE21 A:GLN57 4.3 40.6 1.0
OG B:SER58 4.4 21.7 1.0
HE22 B:GLN57 4.4 39.4 1.0
O A:PHE54 4.4 19.8 1.0
O B:PHE54 4.4 21.4 1.0
H B:SER58 4.5 26.4 1.0
N B:SER58 4.5 21.9 1.0
N A:SER58 4.5 20.9 1.0
C B:GLN57 4.6 21.7 1.0
H A:SER58 4.6 25.1 1.0
C A:GLN57 4.6 20.6 1.0
HE22 A:GLN57 4.6 40.6 1.0
HA B:SER58 4.6 26.9 1.0
HA A:SER58 4.6 26.9 1.0
CA B:GLN57 4.6 21.9 1.0
HE3 B:MET61 4.7 39.2 0.5
CA A:GLN57 4.7 20.2 1.0
HE2 A:MET61 4.8 39.4 0.5
HE2 B:MET61 4.9 39.2 0.5
CA B:PHE54 4.9 20.1 1.0
CA A:PHE54 4.9 19.8 1.0
CG A:PHE54 4.9 19.2 1.0
HE1 A:MET61 4.9 39.4 0.5
CG B:PHE54 5.0 21.4 1.0

Reference:

K.Shi, S.Cho, B.Asim, J.L.Seffernick, L.P.Wackett, H.Aihara. Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica To Be Published.
Page generated: Tue Dec 15 11:59:43 2020

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