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Sodium in PDB 6bni: Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysine and Adenosine

Enzymatic activity of Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysine and Adenosine

All present enzymatic activity of Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysine and Adenosine:
6.1.1.6;

Protein crystallography data

The structure of Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysine and Adenosine, PDB code: 6bni was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.79 / 1.85
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 117.870, 142.630, 72.910, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 18.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysine and Adenosine (pdb code 6bni). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysine and Adenosine, PDB code: 6bni:

Sodium binding site 1 out of 1 in 6bni

Go back to Sodium Binding Sites List in 6bni
Sodium binding site 1 out of 1 in the Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysine and Adenosine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysine and Adenosine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na612

b:33.0
occ:1.00
 OG1 A:THR361 2.2 22.4 1.0
O A:HOH1250 2.4 43.2 1.0
O A:HOH1113 2.4 20.8 1.0
O A:THR361 2.5 23.7 1.0
O A:HOH1217 2.7 39.6 1.0
C A:THR361 3.2 22.7 1.0
CB A:THR361 3.4 22.6 1.0
CA A:THR361 3.6 22.4 1.0
N A:THR361 3.6 19.1 1.0
O A:HOH1244 4.1 39.4 1.0
O A:HOH1011 4.1 26.0 1.0
N A:PRO362 4.2 20.5 1.0
O A:HOH1308 4.4 36.4 1.0
CG2 A:THR361 4.5 19.9 1.0
O A:HOH1147 4.6 28.6 1.0
CD A:PRO362 4.6 22.1 1.0
CG2 A:THR360 4.7 22.4 1.0
C A:THR360 4.8 19.3 1.0

Reference:

D.M.Dranow, D.Lorimer, T.E.Edwards. Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysine and Adenosine To Be Published.
Page generated: Tue Oct 8 02:12:32 2024

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