Sodium in PDB, part 183 (files: 7281-7320),
PDB 5xvd-5ysu
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 7281-7320 (PDB 5xvd-5ysu).
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5xvd (Na: 2) - [Nife]-Hydrogenase (Hyb-Type) From Citrobacter Sp. S-77 in An Air- Oxidized Condition
Other atoms:
Ni (2);
Mg (2);
Fe (32);
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5xwz (Na: 4) - Crystal Structure of A Lactonase From Cladophialophora Bantiana
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5xxs (Na: 1) - Crystal Structure of Native Ribt From Bacillus Subtilis
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5y07 (Na: 2) - Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis with Prpp.
Other atoms:
Mg (2);
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5y0l (Na: 2) - Structure of 6-Aminohexanoate-Oligomer Hydrolase From Arthrobacter Sp. KI72., D122G/H130Y Muntant
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5y3e (Na: 5) - Crystal Structure of Sars Coronavirus Papain-Like Protease in Complex with Glycerol
Other atoms:
Zn (1);
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5y3q (Na: 5) - Crystal Structure of Sars Coronavirus Papain-Like Protease Conjugated with Beta-Mercaptoethanol
Other atoms:
Zn (1);
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5y3s (Na: 1) - Crystal Structure of Human NLRP1 Leucine Rich Repeat Domain
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5y4a (Na: 2) - Cadmium Directed Assembly of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis.
Other atoms:
Cd (5);
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5y5e (Na: 1) - Crystal Structure of Phospholipase A2 with Inhibitor
Other atoms:
F (3);
Ca (1);
Cl (5);
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5y7d (Na: 5) - Crystal Structure of Human Endothelial-Overexpressed Lps Associated Factor 1
Other atoms:
Cl (9);
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5y8w (Na: 1) - Crystal Structure Analysis of the BRD4
Other atoms:
Br (1);
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5y8z (Na: 1) - Crystal Structure Analysis of the BRD4
Other atoms:
Br (1);
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5y94 (Na: 1) - Crystal Structure Analysis of the BRD4
Other atoms:
Br (1);
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5yal (Na: 1) - Ferulic Acid Esterase From Streptomyces Cinnamoneus at 1.5 A Resolution
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5yao (Na: 2) - The Complex Structure of SZ529 and Expoxid
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5yax (Na: 1) - Crystal Structure of A Human Neutralizing Antibody Bound to A Hbv PRES1 Peptide
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5yby (Na: 4) - Structure of Human Gliomedin
Other atoms:
Ca (2);
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5ybz (Na: 2) - High Resolution Structure of Complement C1Q-Like Protein 3 C1Q Domain
Other atoms:
Cl (1);
Ca (1);
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5ydb (Na: 4) - Crystal Structure of the Complex of Type II Dehydroquinate Dehydratase From Acinetobacter Baumannii with Dehydroquinic Acid at 1.76 Angstrom Resolution
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5ydd (Na: 1) - Crystal Structure of C-Terminal Domain of RV1828 From Mycobacterium Tuberculosis
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5ydi (Na: 4) - Crystal Structure of Acetylcholinesterase Catalytic Subunits of the Malaria Vector Anopheles Gambiae, New Crystal Packing
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5yid (Na: 1) - Crystal Structure of Kni-10395 Bound Plasmepsin II (Pmii) From Plasmodium Falciparum
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5yie (Na: 1) - Crystal Structure of Kni-10742 Bound Plasmepsin II (Pmii) From Plasmodium Falciparum
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5yjg (Na: 1) - Structural Insights Into Periostin Functions
Other atoms:
Mg (8);
Zn (1);
Ca (6);
Cl (16);
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5yjh (Na: 1) - Structural Insights Into Periostin Functions
Other atoms:
Mg (9);
Zn (1);
Ca (3);
Cl (18);
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5yjs (Na: 1) - Structure of Vicilin From Capsicum Annuum
Other atoms:
Cu (2);
Cl (1);
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5ykj (Na: 1) - Structural Basis of the Thiol Resolving Mechanism in Yeast Mitochondrial 1-Cys Peroxiredoxin Via Glutathione/Thioredoxin Systems
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5yky (Na: 1) - Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked with 10 Mm Rose Bengal and 10MM H2PTCL6
Other atoms:
Pt (2);
Cl (12);
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5yl8 (Na: 2) - The Crystal Structure of Inactive Dimeric Peptidyl-Trna Hydrolase From Acinetobacter Baumannii at 1.79 A Resolution
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5yo1 (Na: 1) - Structure of Epepn E298A Mutant in Complex with Puromycin
Other atoms:
Zn (1);
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5yoh (Na: 1) - Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105M Mutant) in Complex with Methionine
Other atoms:
Co (2);
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5yoi (Na: 1) - Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105T Mutant) in Complex with Methionine
Other atoms:
Co (2);
-
5ypd (Na: 1) - Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant) in Complex with Methionine
Other atoms:
Co (2);
Cl (1);
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5ypj (Na: 1) - Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant).
Other atoms:
Co (2);
Cl (1);
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5ypk (Na: 7) - Crystal Structure of Ndm-1 Bound to Hydrolyzed Imipenem Representing An EI2 Complex
Other atoms:
Cl (1);
Zn (16);
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5yr5 (Na: 1) - Human Methionine Aminopeptidase Type 1B (F309L Mutant) in Complex with Ovalicin
Other atoms:
Co (3);
-
5yr6 (Na: 1) - Human Methionine Aminopeptidase Type 1B (F309L Mutant) in Complex with TNP470
Other atoms:
Co (2);
-
5yr7 (Na: 1) - Human Methionine Aminopeptidase Type 1B (F309L Mutant)
Other atoms:
Co (4);
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5ysu (Na: 1) - Plumbagin in Complex with CRM1-RANM189D-RANBP1
Other atoms:
Mg (1);
Cl (2);
Page generated: Tue Feb 25 11:38:05 2025
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