Sodium in PDB 5y3s: Crystal Structure of Human NLRP1 Leucine Rich Repeat Domain

The structure of Crystal Structure of Human NLRP1 Leucine Rich Repeat Domain, PDB code: 5y3s was solved by T.Jin, T.S.Xiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.76 / 2.45
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	141.480, 141.480, 294.000, 90.00, 90.00, 120.00
R / Rfree (%)	21.2 / 25.9

The binding sites of Sodium atom in the Crystal Structure of Human NLRP1 Leucine Rich Repeat Domain (pdb code 5y3s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human NLRP1 Leucine Rich Repeat Domain, PDB code: 5y3s:

Sodium binding site 1 out of 1 in the Crystal Structure of Human NLRP1 Leucine Rich Repeat Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human NLRP1 Leucine Rich Repeat Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1002 b:74.0 occ:1.00 O A:LEU889 2.5 68.4 1.0 O A:GLN891 2.6 76.6 1.0 CD A:PRO922 2.6 82.8 1.0 OG A:SER921 3.0 75.3 1.0 CA A:SER921 3.0 83.9 1.0 O A:CYS894 3.2 86.7 1.0 CB A:SER921 3.4 73.9 1.0 O A:ALA920 3.6 79.8 1.0 N A:PRO922 3.6 91.5 1.0 C A:GLN891 3.6 82.0 1.0 C A:LEU889 3.7 67.0 1.0 CG A:PRO922 3.7 90.2 1.0 C A:SER921 3.8 89.5 1.0 C A:ARG890 3.8 75.1 1.0 O A:ARG890 3.9 72.5 1.0 N A:SER921 4.0 75.7 1.0 N A:GLN891 4.1 73.7 1.0 C A:ALA920 4.2 70.5 1.0 C A:CYS894 4.2 82.3 1.0 CA A:ARG890 4.2 70.3 1.0 N A:ARG890 4.4 71.0 1.0 N A:PRO892 4.4 84.8 1.0 CA A:PRO892 4.4 83.0 1.0 CB A:CYS894 4.5 78.6 1.0 CA A:GLN891 4.5 77.7 1.0 CA A:CYS894 4.7 80.1 1.0 N A:CYS894 4.8 81.0 1.0 CA A:LEU889 4.8 66.1 1.0 C A:PRO892 4.8 79.1 1.0 O A:PRO892 4.9 81.8 1.0 SG A:CYS894 4.9 76.4 1.0 CA A:PRO922 5.0 98.8 1.0

T.Jin, T.S.Xiao. Crystal Structure of Human NLRP1 Lrr Domain To Be Published.