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Sodium in PDB 5ypj: Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant).

Enzymatic activity of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant).

All present enzymatic activity of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant).:
3.4.11.18;

Protein crystallography data

The structure of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant)., PDB code: 5ypj was solved by C.B.Sandeep, A.Addlagatta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.63 / 2.01
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.285, 48.536, 56.353, 90.00, 95.00, 90.00
R / Rfree (%) 15.9 / 20.8

Other elements in 5ypj:

The structure of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant). also contains other interesting chemical elements:

Cobalt (Co) 2 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant). (pdb code 5ypj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant)., PDB code: 5ypj:

Sodium binding site 1 out of 1 in 5ypj

Go back to Sodium Binding Sites List in 5ypj
Sodium binding site 1 out of 1 in the Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant).


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na304

b:34.4
occ:1.00
 O A:VAL111 2.7 25.9 1.0
O A:THR265 2.7 19.9 1.0
O A:ASN109 2.8 21.7 1.0
O A:HOH538 2.8 17.9 1.0
O A:SER107 3.3 18.7 1.0
N A:ASN109 3.6 21.6 1.0
C A:LEU108 3.6 21.8 1.0
C A:ASN109 3.7 22.4 1.0
CG2 A:THR265 3.7 26.8 1.0
C A:THR265 3.7 20.9 1.0
O A:LEU108 3.8 22.0 1.0
C A:VAL111 3.8 24.4 1.0
C A:SER107 3.9 24.4 1.0
CA A:ASN109 4.1 23.9 1.0
N A:VAL111 4.2 22.8 1.0
O A:HOH469 4.3 22.4 1.0
CA A:LEU108 4.4 24.9 1.0
N A:LEU108 4.4 25.6 1.0
N A:THR265 4.4 24.2 1.0
CB A:SER107 4.5 21.7 1.0
CA A:VAL111 4.5 22.9 1.0
CA A:THR265 4.5 23.6 1.0
N A:ALA266 4.6 20.3 1.0
CB A:THR265 4.6 25.1 1.0
CA A:ALA266 4.7 19.4 1.0
N A:GLU110 4.7 21.1 1.0
CD1 A:ILE127 4.7 23.0 1.0
CG1 A:ILE127 4.8 23.7 1.0
O A:HOH485 4.8 20.7 1.0
CA A:SER107 4.8 20.6 1.0
CB A:VAL111 4.8 23.5 1.0
N A:ILE112 4.8 22.6 1.0
C A:GLU110 4.8 23.5 1.0
O A:ILE127 4.9 24.6 1.0
O A:ILE112 5.0 22.0 1.0

Reference:

C.B.Sandeep, A.Addlagatta. Mycobacterium Tuberculosis Methionine Aminopeptidase Type 1C (C105N Mutant). To Be Published.
Page generated: Tue Oct 8 01:25:00 2024

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