Sodium in PDB 5yax: Crystal Structure of A Human Neutralizing Antibody Bound to A Hbv PRES1 Peptide

The structure of Crystal Structure of A Human Neutralizing Antibody Bound to A Hbv PRES1 Peptide, PDB code: 5yax was solved by X.Liu, S.Zheng, K.Ye, J.Sui, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.92 / 2.50
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	142.670, 55.662, 67.696, 90.00, 90.00, 90.00
R / Rfree (%)	24.2 / 28.8

The binding sites of Sodium atom in the Crystal Structure of A Human Neutralizing Antibody Bound to A Hbv PRES1 Peptide (pdb code 5yax). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Human Neutralizing Antibody Bound to A Hbv PRES1 Peptide, PDB code: 5yax:

Sodium binding site 1 out of 1 in the Crystal Structure of A Human Neutralizing Antibody Bound to A Hbv PRES1 Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Human Neutralizing Antibody Bound to A Hbv PRES1 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ C:Na101 b:20.4 occ:0.50 O C:HOH204 2.5 16.4 1.0 O C:HOH201 2.8 20.7 1.0 O C:ASN26 3.6 21.0 1.0 OG C:SER27 3.7 25.7 1.0 O C:HOH203 3.8 19.3 1.0 C C:ASN26 4.7 20.9 1.0 O C:GLY24 4.8 40.2 1.0 N C:ASN26 4.9 23.2 1.0 OD1 C:ASN26 4.9 27.7 1.0

D.Li, W.He, X.Liu, S.Zheng, Y.Qi, H.Li, F.Mao, J.Liu, Y.Sun, L.Pan, K.Du, K.Ye, W.Li, J.Sui. A Potent Human Neutralizing Antibody Fc-Dependently Reduces Established Hbv Infections Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 28949917
DOI: 10.7554/ELIFE.26738