Sodium in PDB, part 178 (files: 7081-7120),
PDB 5v0e-5vb8
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 7081-7120 (PDB 5v0e-5vb8).
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5v0e (Na: 1) - Crystal Structure of Human Exonuclease 1 EXO1 (Wt) in Complex with 5' Flap Dna (F5I)
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5v0p (Na: 2) - Crystal Structure of Beta-Ketoacyl-Acp Synthase III-2 (FABH2) (C113A) From Vibrio Cholerae Co-Crystallized with Octanoyl-Coa
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5v1g (Na: 1) - Dna Polymerase Beta Binary Complex with 8-Oxog at the Primer Terminus
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5v1i (Na: 3) - Dna Polymerase Beta Ternary Product Complex with 8-Oxog:C and Inserted Dctp
Other atoms:
Mg (2);
Cl (4);
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5v1j (Na: 2) - Dna Polymerase Beta Open Product Complex with 8-Oxog:C and Inserted Dctp
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5v1n (Na: 1) - Dna Polymerase Beta Substrate Complex with 8-Oxog:A at the Primer Terminus and Incoming Dctp
Other atoms:
Ca (2);
Cl (2);
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5v1o (Na: 3) - Dna Polymerase Beta Product Complex with 8-Oxog:A and Inserted Dctp
Other atoms:
Mg (2);
Cl (3);
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5v1p (Na: 2) - Dna Polymerase Beta Substrate Complex with 8-Oxog:C at the Primer Terminus and Incoming Dctp Analog
Other atoms:
Mg (2);
Cl (4);
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5v1r (Na: 2) - Dna Polymerase Beta Reactant Complex with 8-Oxog:C at the Primer Terminus and Incoming Dctp
Other atoms:
Mg (3);
Cl (4);
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5v4g (Na: 1) - Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with Two Binding Sites
Other atoms:
Ru (3);
Cl (4);
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5v4h (Na: 1) - Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site
Other atoms:
Ru (1);
Cl (2);
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5v4i (Na: 1) - Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site
Other atoms:
Os (1);
Cl (2);
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5v4o (Na: 2) - Crystal Structure of the D141A/Q233E/N240D Variant of Catalase- Peroxidase From B. Pseudomallei
Other atoms:
Fe (2);
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5v4p (Na: 2) - Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde
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5v4q (Na: 1) - Crystal Structure of Human GGT1 in Complex with Don
Other atoms:
Cl (2);
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5v53 (Na: 2) - Crystal Structure of the D141A/Q233E/N240D Variant of Catalase- Peroxidase From B. Pseudomallei with Acetate Bound
Other atoms:
Fe (2);
Cl (2);
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5v5g (Na: 3) - Otu Protease of Crimean Congo Hemorrhagic Fever Virus Bound to Ubiquitin Variant Cc.4
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5v5h (Na: 1) - Otu Protease of Crimean Congo Hemorrhagic Fever Virus Bound to Ubiquitin Variant Cc.2
Other atoms:
Zn (1);
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5v64 (Na: 2) - Crystal Structure of Macrocycles Containing Abeta 15-21 (Qklv(Phi)Fa) and Abeta 30-36 (Aii(Sar)L(Orn)V)
Other atoms:
I (1);
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5v69 (Na: 1) - Crystal Structure of the Middle East Respiratory Syndrome Coronavirus Papain-Like Protease Bound to Ubiquitin Variant Me.4
Other atoms:
Cl (1);
Zn (1);
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5v6n (Na: 1) - Crystal Structure of the Highly Open Channel-Stabilized Mutant C27S + K33C + I9'A + N21'C of Glic Under Reducing Conditions.
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5v6o (Na: 1) - Crystal Structure of the Highly Open Channel-Stabilized Mutant G-2'I + I9'A of Glic
Other atoms:
Cl (5);
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5v6q (Na: 3) - Crystal Structure of Nadph-Dependent Glyoxylate/Hydroxypyruvate Reductase SMC04462 (Smghrb) From Sinorhizobium Meliloti in Complex with Nadp and Malonate
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5v72 (Na: 5) - Crystal Structure of Nadph-Dependent Glyoxylate/Hydroxypyruvate Reductase SMC04462 (Smghrb) From Sinorhizobium Meliloti in Complex with Citrate
Other atoms:
Cl (4);
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5v7e (Na: 3) - T4 Lysozyme Y18YMCL
Other atoms:
Cl (2);
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5v7g (Na: 4) - Crystal Structure of Nadph-Dependent Glyoxylate/Hydroxypyruvate Reductase SMC04462 (Smghrb) From Sinorhizobium Meliloti in Complex with Nadph and Oxalate
Other atoms:
Cl (4);
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5v7n (Na: 4) - Crystal Structure of Nadph-Dependent Glyoxylate/Hydroxypyruvate Reductase SMC04462 (Smghrb) From Sinorhizobium Meliloti in Complex with Nadp and 2-Keto-D-Gluconic Acid
Other atoms:
Mg (7);
Cl (7);
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5v85 (Na: 2) - The Crystal Structure of the Protein of Degv Family COG1307 From Ruminococcus Gnavus Atcc 29149 (Alternative Refinement of Pdb 3JR7 with Vaccenic Acid)
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5v8e (Na: 1) - Structure of Bacillus Cereus PATB1
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5v95 (Na: 1) - Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Manganese.
Other atoms:
Mn (2);
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5v97 (Na: 1) - Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Gtp.
Other atoms:
Mn (3);
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5v9f (Na: 1) - Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Beta Sulfopyruvate and Gtp.
Other atoms:
Mn (3);
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5v9g (Na: 1) - Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Oxalate and Gtp.
Other atoms:
Mn (2);
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5v9h (Na: 2) - Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Phosphoglycolate and Gdp.
Other atoms:
Mn (6);
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5vaw (Na: 1) - Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii AB5075
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5vb3 (Na: 1) - X-Ray Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain + SRC2 Peptide
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5vb5 (Na: 1) - X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with An Inverse Agonist and SRC2 Peptide
Other atoms:
Cl (1);
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5vb6 (Na: 1) - X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with An Inverse Agonist and SRC2 Peptide
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5vb7 (Na: 1) - X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with An Agonist and SRC2 Peptide
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5vb8 (Na: 1) - Crystal Structure of the Navab Voltage-Gated Sodium Channel in An Open State
Page generated: Wed Nov 13 13:04:00 2024
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