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Sodium in PDB, part 178 (files: 7081-7120), PDB 5v1o-5vez

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 7081-7120 (PDB 5v1o-5vez).
  1. 5v1o (Na: 3) - Dna Polymerase Beta Product Complex with 8-Oxog:A and Inserted Dctp
    Other atoms: Mg (2); Cl (3);
  2. 5v1p (Na: 2) - Dna Polymerase Beta Substrate Complex with 8-Oxog:C at the Primer Terminus and Incoming Dctp Analog
    Other atoms: Mg (2); Cl (4);
  3. 5v1r (Na: 2) - Dna Polymerase Beta Reactant Complex with 8-Oxog:C at the Primer Terminus and Incoming Dctp
    Other atoms: Mg (3); Cl (4);
  4. 5v4g (Na: 1) - Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with Two Binding Sites
    Other atoms: Ru (3); Cl (4);
  5. 5v4h (Na: 1) - Ruthenium(II)(Cymene)(Chlorido)2-Lysozyme Adduct Formed When Ruthenium(II)(Cymene)(Bromido)2 Underwent Ligand Exchange, Resulting in One Binding Site
    Other atoms: Ru (1); Cl (2);
  6. 5v4i (Na: 1) - Osmium(II)(Cymene)(Chlorido)2-Lysozyme Adduct with One Binding Site
    Other atoms: Os (1); Cl (2);
  7. 5v4o (Na: 2) - Crystal Structure of the D141A/Q233E/N240D Variant of Catalase- Peroxidase From B. Pseudomallei
    Other atoms: Fe (2);
  8. 5v4p (Na: 2) - Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde
  9. 5v4q (Na: 1) - Crystal Structure of Human GGT1 in Complex with Don
    Other atoms: Cl (2);
  10. 5v53 (Na: 2) - Crystal Structure of the D141A/Q233E/N240D Variant of Catalase- Peroxidase From B. Pseudomallei with Acetate Bound
    Other atoms: Fe (2); Cl (2);
  11. 5v5g (Na: 3) - Otu Protease of Crimean Congo Hemorrhagic Fever Virus Bound to Ubiquitin Variant Cc.4
  12. 5v5h (Na: 1) - Otu Protease of Crimean Congo Hemorrhagic Fever Virus Bound to Ubiquitin Variant Cc.2
    Other atoms: Zn (1);
  13. 5v64 (Na: 2) - Crystal Structure of Macrocycles Containing Abeta 15-21 (Qklv(Phi)Fa) and Abeta 30-36 (Aii(Sar)L(Orn)V)
    Other atoms: I (1);
  14. 5v69 (Na: 1) - Crystal Structure of the Middle East Respiratory Syndrome Coronavirus Papain-Like Protease Bound to Ubiquitin Variant Me.4
    Other atoms: Cl (1); Zn (1);
  15. 5v6n (Na: 1) - Crystal Structure of the Highly Open Channel-Stabilized Mutant C27S + K33C + I9'A + N21'C of Glic Under Reducing Conditions.
  16. 5v6o (Na: 1) - Crystal Structure of the Highly Open Channel-Stabilized Mutant G-2'I + I9'A of Glic
    Other atoms: Cl (5);
  17. 5v6q (Na: 3) - Crystal Structure of Nadph-Dependent Glyoxylate/Hydroxypyruvate Reductase SMC04462 (Smghrb) From Sinorhizobium Meliloti in Complex with Nadp and Malonate
  18. 5v72 (Na: 5) - Crystal Structure of Nadph-Dependent Glyoxylate/Hydroxypyruvate Reductase SMC04462 (Smghrb) From Sinorhizobium Meliloti in Complex with Citrate
    Other atoms: Cl (4);
  19. 5v7e (Na: 3) - T4 Lysozyme Y18YMCL
    Other atoms: Cl (2);
  20. 5v7g (Na: 4) - Crystal Structure of Nadph-Dependent Glyoxylate/Hydroxypyruvate Reductase SMC04462 (Smghrb) From Sinorhizobium Meliloti in Complex with Nadph and Oxalate
    Other atoms: Cl (4);
  21. 5v7n (Na: 4) - Crystal Structure of Nadph-Dependent Glyoxylate/Hydroxypyruvate Reductase SMC04462 (Smghrb) From Sinorhizobium Meliloti in Complex with Nadp and 2-Keto-D-Gluconic Acid
    Other atoms: Mg (7); Cl (7);
  22. 5v85 (Na: 2) - The Crystal Structure of the Protein of Degv Family COG1307 From Ruminococcus Gnavus Atcc 29149 (Alternative Refinement of Pdb 3JR7 with Vaccenic Acid)
  23. 5v8e (Na: 1) - Structure of Bacillus Cereus PATB1
  24. 5v95 (Na: 1) - Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Manganese.
    Other atoms: Mn (2);
  25. 5v97 (Na: 1) - Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Gtp.
    Other atoms: Mn (3);
  26. 5v9f (Na: 1) - Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Beta Sulfopyruvate and Gtp.
    Other atoms: Mn (3);
  27. 5v9g (Na: 1) - Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Oxalate and Gtp.
    Other atoms: Mn (2);
  28. 5v9h (Na: 2) - Structure of the H477R Variant of Rat Cytosolic Pepck in Complex with Phosphoglycolate and Gdp.
    Other atoms: Mn (6);
  29. 5vaw (Na: 1) - Fusion of Maltose-Binding Protein and Pila From Acinetobacter Baumannii AB5075
  30. 5vb3 (Na: 1) - X-Ray Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain + SRC2 Peptide
  31. 5vb5 (Na: 1) - X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with An Inverse Agonist and SRC2 Peptide
    Other atoms: Cl (1);
  32. 5vb6 (Na: 1) - X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with An Inverse Agonist and SRC2 Peptide
  33. 5vb7 (Na: 1) - X-Ray Co-Structure of Nuclear Receptor Ror-Gammat Ligand Binding Domain with An Agonist and SRC2 Peptide
  34. 5vb8 (Na: 1) - Crystal Structure of the Navab Voltage-Gated Sodium Channel in An Open State
  35. 5vbx (Na: 9) - Crystal Structure of Holo-[Acyl-Carrier-Protein] Synthase (Acps) From Escherichia Coli
  36. 5vcl (Na: 6) - Structure of the Qdm Peptide Bound to Qa-1A
  37. 5ve2 (Na: 12) - Crystal Structure of Enoyl-Coa Hydratase/Isomerase From Pseudoalteromonas Atlantica T6C at 2.3 A Resolution.
  38. 5veg (Na: 6) - Structure of A Short-Chain Flavodoxin Associated with A Non-Canonical Pdu Bacterial Microcompartment
    Other atoms: Cd (3);
  39. 5vev (Na: 2) - Crystal Structure of Phosphoribosylamine-Glycine Ligase From Neisseria Gonorrhoeae
  40. 5vez (Na: 3) - Dna Polymerase Beta Substrate Complex with 8-Oxog:A at the Primer Terminus and Incoming Dctp Analog
    Other atoms: Mg (1);
Page generated: Wed Nov 4 05:35:50 2020

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