Sodium in PDB 5v8e: Structure of Bacillus Cereus PATB1

The structure of Structure of Bacillus Cereus PATB1, PDB code: 5v8e was solved by D.Sychantha, D.J.Little, R.N.Chapman, G.J.Boons, H.Robinson, P.L.Howell, A.J.Clarke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.78 / 2.20
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	133.760, 133.760, 87.311, 90.00, 90.00, 120.00
R / Rfree (%)	19.9 / 24.2

The binding sites of Sodium atom in the Structure of Bacillus Cereus PATB1 (pdb code 5v8e). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Bacillus Cereus PATB1, PDB code: 5v8e:

Sodium binding site 1 out of 1 in the Structure of Bacillus Cereus PATB1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Bacillus Cereus PATB1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:60.3 occ:1.00 O B:HOH537 2.4 55.3 1.0 O A:HOH600 2.5 56.8 1.0 O B:ARG238 3.3 42.8 1.0 O A:ASN186 3.5 38.8 1.0 C A:ASN186 3.5 35.7 1.0 O A:GLN185 3.7 46.0 1.0 N A:TYR187 3.8 35.0 1.0 CA A:ASN186 4.0 38.4 1.0 N B:CYS240 4.0 43.8 1.0 CA A:TYR187 4.2 38.2 1.0 CA B:THR239 4.2 45.8 1.0 C B:ARG238 4.2 40.8 1.0 C A:GLN185 4.4 43.5 1.0 C A:TYR187 4.4 37.4 1.0 N A:ASN186 4.5 39.0 1.0 CB B:CYS240 4.6 49.2 1.0 C B:THR239 4.6 44.9 1.0 N B:THR239 4.7 37.9 1.0 O A:TYR187 4.7 38.9 1.0 NH1 B:ARG238 4.7 41.0 1.0 N A:THR188 4.8 39.7 1.0 SG B:CYS240 4.9 60.9 1.0 O A:HOH612 4.9 67.2 1.0 CA B:CYS240 4.9 52.8 1.0

D.Sychantha, D.J.Little, R.N.Chapman, G.J.Boons, H.Robinson, P.L.Howell, A.J.Clarke. PATB1 Is An O-Acetyltransferase That Decorates Secondary Cell Wall Polysaccharides. Nat. Chem. Biol. V. 14 79 2018.
ISSN: ESSN 1552-4469
PubMed: 29083419
DOI: 10.1038/NCHEMBIO.2509