Sodium in PDB 5v4p: Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde

All present enzymatic activity of Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde:
1.6.99.1;

The structure of Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde, PDB code: 5v4p was solved by J.Stewart, R.W.Powell Iii, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.92 / 1.88
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	61.533, 106.421, 141.010, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 21.8

The binding sites of Sodium atom in the Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde (pdb code 5v4p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde, PDB code: 5v4p:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:39.5 occ:1.00 OC' A:TOE404 1.8 53.2 1.0 OF' A:TOE404 2.2 63.0 1.0 CE' A:TOE404 2.3 50.2 1.0 OD1 A:ASN179 2.4 20.2 1.0 CD' A:TOE404 2.4 56.2 1.0 CB' A:TOE404 2.8 36.4 1.0 O2' A:TOE404 2.8 41.2 1.0 CG' A:TOE404 2.9 42.8 1.0 OI' A:TOE404 3.0 48.1 1.0 CA' A:TOE404 3.3 35.5 1.0 CH' A:TOE404 3.4 41.6 1.0 CG A:ASN179 3.4 22.3 1.0 ND2 A:ASN179 3.9 18.2 1.0 CK' A:TOE404 4.0 42.7 1.0 NE2 A:HIS175 4.4 34.9 1.0 CD2 A:HIS175 4.6 39.8 1.0 CB A:ASN179 4.7 11.6 1.0 CA A:ASN179 5.0 11.5 1.0

Sodium binding site 2 out of 2 in the Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde within 5.0Å range: probe atom residue distance (Å) B Occ B:Na403 b:57.4 occ:1.00 OD1 B:ASN179 2.5 17.4 1.0 O2' B:TOE404 2.5 37.5 1.0 CH' B:TOE404 2.7 33.2 1.0 CB' B:TOE404 2.7 36.3 1.0 CD' B:TOE404 2.8 53.0 1.0 CA' B:TOE404 3.1 26.4 1.0 OF' B:TOE404 3.1 66.1 1.0 OC' B:TOE404 3.2 50.0 1.0 CG' B:TOE404 3.4 40.8 1.0 CE' B:TOE404 3.5 52.6 1.0 CG B:ASN179 3.5 22.1 1.0 OI' B:TOE404 3.7 39.3 1.0 CK' B:TOE404 3.8 35.8 1.0 ND2 B:ASN179 4.0 18.1 1.0 CB B:ASN179 4.7 11.5 1.0 OD1 B:ASP91 4.8 43.4 1.0 CA B:ASN179 5.0 10.1 1.0

J.Stewart, R.W.Powell Iii. Saccharomyces Cerevisiae Oye 3 Soaked with P-Hydroxybenzaldehyde To Be Published.