Sodium in PDB, part 173 (files: 6881-6920),
PDB 5syl-5tcd
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 6881-6920 (PDB 5syl-5tcd).
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5syl (Na: 2) - B. Pseudomallei Katg with Kcn Bound
Other atoms:
Fe (2);
Cl (2);
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5syu (Na: 2) - Crystal Structure of Burkholderia Pseudomallei Katg E242Q Variant
Other atoms:
Fe (2);
Cl (2);
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5syv (Na: 2) - Crystal Structure of Burkholderia Pseudomallei Katg N240D Variant
Other atoms:
Fe (2);
Cl (2);
-
5syw (Na: 2) - Crystal Structure of Burkhoderia Pseudomallei Katg Variant Q233E
Other atoms:
Fe (2);
Cl (2);
-
5syx (Na: 2) - Crystal Structure of Burkholderia Pseudomallei Katg Variant W139F
Other atoms:
Fe (2);
Cl (2);
-
5syy (Na: 2) - Crystal Structure of the S324G Variant of Catalase-Peroxidase From B. Pseudomallei
Other atoms:
Fe (2);
Cl (2);
-
5t03 (Na: 6) - Crystal Structure of Heparan Sulfate 6-O-Sulfotransferase with Bound Pap and Glucuronic Acid Containing Hexasaccharide Substrate
Other atoms:
Cl (5);
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5t05 (Na: 7) - Crystal Structure of Heparan Sulfate 6-O-Sulfotransferase with Bound Pap and IDOA2S Containing Hexasaccharide Substrate
Other atoms:
Cl (4);
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5t0a (Na: 6) - Crystal Structure of Heparan Sulfate 6-O-Sulfotransferase with Bound Pap and Heptasaccharide Substrate
Other atoms:
Cl (3);
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5t0s (Na: 1) - Synaptotagmin 1 C2B Domain, Cadmium-Bound
Other atoms:
Cd (1);
-
5t1q (Na: 6) - 2.15 Angstrom Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Staphylococcus Aureus.
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5t1w (Na: 2) - Aminomethyl-Derived Beta Secretase (BACE1) Inhibitors: Engaging GLY230 Without An Anilide Functionality
Other atoms:
F (6);
I (3);
Cl (2);
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5t25 (Na: 10) - Kinetic, Spectral and Structural Characterization of the Slow Binding Inhibitor Acetopyruvate with Dihydrodipicolinate Synthase From Escherichia Coli.
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5t26 (Na: 7) - Kinetic, Spectral and Structural Characterization of the Slow Binding Inhibitor Acetopyruvate with Dihydrodipicolinate Synthase From Escherichia Coli.
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5t2t (Na: 2) - Crystal Structure of Lymphocytic Choriomeningitis Mammarenavirus Endonuclease Bound to Compound L742001
Other atoms:
Mn (2);
Cl (3);
-
5t3r (Na: 1) - Crystal Structure of BT1762-1763
Other atoms:
Mg (2);
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5t4b (Na: 1) - Human DPP4 in Complex with A Ligand 34A
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5t4e (Na: 1) - Human DPP4 in Complex with Ligand 19A
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5t4f (Na: 1) - Human DPP4 in Complex with Ligand 34P
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5t4h (Na: 1) - Human DPP4 in Complex with Ligand 34N
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5t5i (Na: 5) - Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A
Other atoms:
W (2);
Mg (2);
K (18);
Zn (4);
Fe (88);
Ca (2);
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5t6m (Na: 4) - Structure of the Tryptophan Synthase B-Subunit From Pyroccus Furiosus with B-Methyltryptophan Non-Covalently Bound
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5t6s (Na: 1) - Crystal Structure of the A/Shanghai/2/2013 (H7N9) Influenza Virus Hemagglutinin in Complex with the Antiviral Drug Arbidol
Other atoms:
Br (6);
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5t73 (Na: 8) - Crystal Structure of S.Aureus Glyceraldehyde-3-Phosphate-Dehydrogenase (Gap) Containing Oxidized CYS151
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5t77 (Na: 2) - Crystal Structure of the Mop Flippase Murj
Other atoms:
Zn (1);
Ca (3);
Cl (5);
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5t7m (Na: 1) - Ligand Binding Domain of Pseudomonas Aeruginosa PAO1 Amino Acid Chemoreceptor Pcta in Complex with L-Trp
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5t7u (Na: 1) - Crystal Structure of Galectin-8N in Complex with Glycerol
Other atoms:
Cl (1);
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5t8k (Na: 4) - 1.95 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with Adenine and Nad
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5t91 (Na: 1) - Crystal Structure of B. Subtilis 168 Glpq in Complex with Bicine
Other atoms:
Ca (1);
-
5t9b (Na: 1) - Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak)
Other atoms:
Ca (1);
-
5t9c (Na: 1) - Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (1 Hour Soak)
Other atoms:
Ca (1);
-
5t9x (Na: 3) - Crystal Structure of BUGH16BWT
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5tao (Na: 1) - Haloferax Volcanii Malate Synthase Lead(II) Complex
Other atoms:
Pb (4);
K (3);
Cl (4);
-
5tb8 (Na: 5) - Precatalytic Ternary Complex of Human Dna Polymerase Beta in Closed Conformation with Gapped Dna Substrate Incoming (-)3TC-Tp and MN2+.
Other atoms:
Mn (6);
Cl (2);
-
5tb9 (Na: 4) - Precatalytic Ternary Complex of Human Dna Polymerase Beta in Closed Conformation with Gapped Dna Substrate Incoming (-)Ftc-Tp and MN2+.
Other atoms:
F (1);
Mn (6);
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5tba (Na: 5) - Postcatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substrate, Incorporated (-)3TC and Ppi.
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5tbb (Na: 4) - Postcatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substrate, Incorporated (-)Ftc and Ppi.
Other atoms:
F (1);
Mn (1);
-
5tbc (Na: 6) - Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substrate, Incorporated (-)3TC-Mp and An Another Incoming (-)3TC- Tp Nucleotide.
Other atoms:
Cl (1);
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5tc6 (Na: 1) - Crystal Structure of Human 5'-Deoxy-5'-Methylthioadenosine Phosphorylase in Complex with Propylthio-Immucillin-A
Other atoms:
Cl (1);
-
5tcd (Na: 1) - Human Alkaline Sphingomyelinase (ENPP7) in Complex with Phosphocholine
Other atoms:
Zn (2);
I (37);
Page generated: Thu Dec 28 11:24:27 2023
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