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Sodium in PDB, part 173 (files: 6881-6920), PDB 5syl-5tcd

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 6881-6920 (PDB 5syl-5tcd).
  1. 5syl (Na: 2) - B. Pseudomallei Katg with Kcn Bound
    Other atoms: Fe (2); Cl (2);
  2. 5syu (Na: 2) - Crystal Structure of Burkholderia Pseudomallei Katg E242Q Variant
    Other atoms: Fe (2); Cl (2);
  3. 5syv (Na: 2) - Crystal Structure of Burkholderia Pseudomallei Katg N240D Variant
    Other atoms: Fe (2); Cl (2);
  4. 5syw (Na: 2) - Crystal Structure of Burkhoderia Pseudomallei Katg Variant Q233E
    Other atoms: Fe (2); Cl (2);
  5. 5syx (Na: 2) - Crystal Structure of Burkholderia Pseudomallei Katg Variant W139F
    Other atoms: Fe (2); Cl (2);
  6. 5syy (Na: 2) - Crystal Structure of the S324G Variant of Catalase-Peroxidase From B. Pseudomallei
    Other atoms: Fe (2); Cl (2);
  7. 5t03 (Na: 6) - Crystal Structure of Heparan Sulfate 6-O-Sulfotransferase with Bound Pap and Glucuronic Acid Containing Hexasaccharide Substrate
    Other atoms: Cl (5);
  8. 5t05 (Na: 7) - Crystal Structure of Heparan Sulfate 6-O-Sulfotransferase with Bound Pap and IDOA2S Containing Hexasaccharide Substrate
    Other atoms: Cl (4);
  9. 5t0a (Na: 6) - Crystal Structure of Heparan Sulfate 6-O-Sulfotransferase with Bound Pap and Heptasaccharide Substrate
    Other atoms: Cl (3);
  10. 5t0s (Na: 1) - Synaptotagmin 1 C2B Domain, Cadmium-Bound
    Other atoms: Cd (1);
  11. 5t1q (Na: 6) - 2.15 Angstrom Crystal Structure of N-Acetylmuramoyl-L-Alanine Amidase From Staphylococcus Aureus.
  12. 5t1w (Na: 2) - Aminomethyl-Derived Beta Secretase (BACE1) Inhibitors: Engaging GLY230 Without An Anilide Functionality
    Other atoms: F (6); I (3); Cl (2);
  13. 5t25 (Na: 10) - Kinetic, Spectral and Structural Characterization of the Slow Binding Inhibitor Acetopyruvate with Dihydrodipicolinate Synthase From Escherichia Coli.
  14. 5t26 (Na: 7) - Kinetic, Spectral and Structural Characterization of the Slow Binding Inhibitor Acetopyruvate with Dihydrodipicolinate Synthase From Escherichia Coli.
  15. 5t2t (Na: 2) - Crystal Structure of Lymphocytic Choriomeningitis Mammarenavirus Endonuclease Bound to Compound L742001
    Other atoms: Mn (2); Cl (3);
  16. 5t3r (Na: 1) - Crystal Structure of BT1762-1763
    Other atoms: Mg (2);
  17. 5t4b (Na: 1) - Human DPP4 in Complex with A Ligand 34A
  18. 5t4e (Na: 1) - Human DPP4 in Complex with Ligand 19A
  19. 5t4f (Na: 1) - Human DPP4 in Complex with Ligand 34P
  20. 5t4h (Na: 1) - Human DPP4 in Complex with Ligand 34N
  21. 5t5i (Na: 5) - Tungsten-Containing Formylmethanofuran Dehydrogenase From Methanothermobacter Wolfeii, Orthorhombic Form at 1.9 A
    Other atoms: W (2); Mg (2); K (18); Zn (4); Fe (88); Ca (2);
  22. 5t6m (Na: 4) - Structure of the Tryptophan Synthase B-Subunit From Pyroccus Furiosus with B-Methyltryptophan Non-Covalently Bound
  23. 5t6s (Na: 1) - Crystal Structure of the A/Shanghai/2/2013 (H7N9) Influenza Virus Hemagglutinin in Complex with the Antiviral Drug Arbidol
    Other atoms: Br (6);
  24. 5t73 (Na: 8) - Crystal Structure of S.Aureus Glyceraldehyde-3-Phosphate-Dehydrogenase (Gap) Containing Oxidized CYS151
  25. 5t77 (Na: 2) - Crystal Structure of the Mop Flippase Murj
    Other atoms: Zn (1); Ca (3); Cl (5);
  26. 5t7m (Na: 1) - Ligand Binding Domain of Pseudomonas Aeruginosa PAO1 Amino Acid Chemoreceptor Pcta in Complex with L-Trp
  27. 5t7u (Na: 1) - Crystal Structure of Galectin-8N in Complex with Glycerol
    Other atoms: Cl (1);
  28. 5t8k (Na: 4) - 1.95 Angstrom Crystal Structure of S-Adenosylhomocysteinase From Cryptosporidium Parvum in Complex with Adenine and Nad
  29. 5t91 (Na: 1) - Crystal Structure of B. Subtilis 168 Glpq in Complex with Bicine
    Other atoms: Ca (1);
  30. 5t9b (Na: 1) - Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak)
    Other atoms: Ca (1);
  31. 5t9c (Na: 1) - Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (1 Hour Soak)
    Other atoms: Ca (1);
  32. 5t9x (Na: 3) - Crystal Structure of BUGH16BWT
  33. 5tao (Na: 1) - Haloferax Volcanii Malate Synthase Lead(II) Complex
    Other atoms: Pb (4); K (3); Cl (4);
  34. 5tb8 (Na: 5) - Precatalytic Ternary Complex of Human Dna Polymerase Beta in Closed Conformation with Gapped Dna Substrate Incoming (-)3TC-Tp and MN2+.
    Other atoms: Mn (6); Cl (2);
  35. 5tb9 (Na: 4) - Precatalytic Ternary Complex of Human Dna Polymerase Beta in Closed Conformation with Gapped Dna Substrate Incoming (-)Ftc-Tp and MN2+.
    Other atoms: F (1); Mn (6);
  36. 5tba (Na: 5) - Postcatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substrate, Incorporated (-)3TC and Ppi.
  37. 5tbb (Na: 4) - Postcatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substrate, Incorporated (-)Ftc and Ppi.
    Other atoms: F (1); Mn (1);
  38. 5tbc (Na: 6) - Precatalytic Ternary Complex of Human Dna Polymerase Beta with Gapped Dna Substrate, Incorporated (-)3TC-Mp and An Another Incoming (-)3TC- Tp Nucleotide.
    Other atoms: Cl (1);
  39. 5tc6 (Na: 1) - Crystal Structure of Human 5'-Deoxy-5'-Methylthioadenosine Phosphorylase in Complex with Propylthio-Immucillin-A
    Other atoms: Cl (1);
  40. 5tcd (Na: 1) - Human Alkaline Sphingomyelinase (ENPP7) in Complex with Phosphocholine
    Other atoms: Zn (2); I (37);
Page generated: Sat Sep 25 14:49:14 2021

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