Atomistry » Sodium » PDB 5syu-5tde » 5t9b
Atomistry »
  Sodium »
    PDB 5syu-5tde »
      5t9b »

Sodium in PDB 5t9b: Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak)

Enzymatic activity of Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak)

All present enzymatic activity of Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak):
3.1.4.46;

Protein crystallography data

The structure of Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak), PDB code: 5t9b was solved by F.K.K.Li, N.C.J.Strynadka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.83 / 1.62
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.463, 60.225, 88.418, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 21.6

Other elements in 5t9b:

The structure of Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak) also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak) (pdb code 5t9b). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak), PDB code: 5t9b:

Sodium binding site 1 out of 1 in 5t9b

Go back to Sodium Binding Sites List in 5t9b
Sodium binding site 1 out of 1 in the Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of B. Subtilis 168 Glpq in Complex with Glycerol-3- Phosphate (5 Minute Soak) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Na303

b:47.3
occ:0.83
 O G:HOH426 2.2 35.8 1.0
O G:HOH518 2.2 34.8 0.9
O G:THR93 2.4 32.0 1.0
O G:HOH539 2.5 62.9 1.0
O G:ASP90 2.5 30.4 1.0
O G:HOH546 2.6 53.2 0.9
C G:THR93 3.6 33.1 1.0
C G:ASP90 3.7 29.6 1.0
CA G:ASN94 4.3 31.9 1.0
O G:GLY95 4.4 33.2 1.0
N G:ASN94 4.4 33.5 1.0
CA G:ASP90 4.4 28.4 1.0
O G:ARG91 4.4 29.4 1.0
O G:HOH583 4.4 52.9 1.0
N G:THR93 4.5 30.3 1.0
C G:ARG91 4.6 29.5 1.0
O G:HOH573 4.6 61.0 1.0
CA G:THR93 4.7 32.4 1.0
N G:ARG91 4.7 28.8 1.0
C G:ASN94 4.8 37.0 1.0
CA G:ARG91 4.9 28.6 1.0
N G:GLY95 5.0 34.6 1.0
O G:LEU89 5.0 31.9 1.0

Reference:

C.L.Myers, F.K.Li, B.M.Koo, O.M.El-Halfawy, S.French, C.A.Gross, N.C.Strynadka, E.D.Brown. Identification of Two Phosphate Starvation-Induced Wall Teichoic Acid Hydrolases Provides First Insights Into the Degradative Pathway of A Key Bacterial Cell Wall Component. J. Biol. Chem. V. 291 26066 2016.
ISSN: ESSN 1083-351X
PubMed: 27780866
DOI: 10.1074/JBC.M116.760447
Page generated: Tue Oct 8 00:04:55 2024

Last articles

Ca in 5NF3
Ca in 5NF2
Ca in 5NF0
Ca in 5NEY
Ca in 5NES
Ca in 5NEU
Ca in 5NET
Ca in 5NER
Ca in 5NEM
Ca in 5NE5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy