Atomistry » Sodium » PDB 5syl-5tcd » 5t6s
Atomistry »
  Sodium »
    PDB 5syl-5tcd »
      5t6s »

Sodium in PDB 5t6s: Crystal Structure of the A/Shanghai/2/2013 (H7N9) Influenza Virus Hemagglutinin in Complex with the Antiviral Drug Arbidol

Protein crystallography data

The structure of Crystal Structure of the A/Shanghai/2/2013 (H7N9) Influenza Virus Hemagglutinin in Complex with the Antiviral Drug Arbidol, PDB code: 5t6s was solved by R.U.Kadam, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.50 / 2.36
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.419, 231.490, 127.850, 90.00, 96.88, 90.00
R / Rfree (%) 20.4 / 25

Other elements in 5t6s:

The structure of Crystal Structure of the A/Shanghai/2/2013 (H7N9) Influenza Virus Hemagglutinin in Complex with the Antiviral Drug Arbidol also contains other interesting chemical elements:

Bromine (Br) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the A/Shanghai/2/2013 (H7N9) Influenza Virus Hemagglutinin in Complex with the Antiviral Drug Arbidol (pdb code 5t6s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the A/Shanghai/2/2013 (H7N9) Influenza Virus Hemagglutinin in Complex with the Antiviral Drug Arbidol, PDB code: 5t6s:

Sodium binding site 1 out of 1 in 5t6s

Go back to Sodium Binding Sites List in 5t6s
Sodium binding site 1 out of 1 in the Crystal Structure of the A/Shanghai/2/2013 (H7N9) Influenza Virus Hemagglutinin in Complex with the Antiviral Drug Arbidol


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the A/Shanghai/2/2013 (H7N9) Influenza Virus Hemagglutinin in Complex with the Antiviral Drug Arbidol within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Na204

b:56.2
occ:1.00
OE1 J:GLU128 3.4 64.6 1.0
OE1 L:GLU128 3.9 64.6 1.0
OE1 H:GLU128 4.2 58.1 1.0
CD J:GLU128 4.5 61.6 1.0
OE2 J:GLU128 4.8 60.4 1.0
NH2 H:ARG170 4.9 63.5 1.0
NH2 J:ARG170 5.0 42.7 1.0
CD L:GLU128 5.0 61.8 1.0

Reference:

R.U.Kadam, I.A.Wilson. Structural Basis of Influenza Virus Fusion Inhibition By the Antiviral Drug Arbidol. Proc. Natl. Acad. Sci. V. 114 206 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28003465
DOI: 10.1073/PNAS.1617020114
Page generated: Tue Dec 15 11:35:48 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy