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Sodium in PDB, part 141 (files: 5601-5640), PDB 5dbb-5dwk

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 5601-5640 (PDB 5dbb-5dwk).
  1. 5dbb (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the Dg Base Paired with A Da
  2. 5dbc (Na: 2) - Structure of Human Dna Polymerase Beta Host-Guest Complex with the Dg Base Paired with A Dg
  3. 5ddm (Na: 1) - Human Dna Polymerase Lambda- Apoenzyme and Complex with 6 Paired Dna
  4. 5ddp (Na: 10) - L-Glutamine Riboswitch Bound with L-Glutamine
    Other atoms: Mg (9);
  5. 5ddq (Na: 12) - L-Glutamine Riboswitch Bound with L-Glutamine Soaked with MN2+
    Other atoms: Mg (3); Mn (5);
  6. 5ddr (Na: 4) - L-Glutamine Riboswitch Bound with L-Glutamine Soaked with Cs+
    Other atoms: Mg (11); K (7); Cs (7);
  7. 5dgq (Na: 2) - Crystal Structure of GH9 Exo-Beta-D-Glucosaminidase PBPRA0520
  8. 5dgr (Na: 2) - Crystal Structure of GH9 Exo-Beta-D-Glucosaminidase PBPRA0520, Glucosamine Complex
  9. 5dgu (Na: 2) - Crystal Structure of Hiv-1 Protease Inhibitors Containing Substituted Fused-Tetrahydropyranyl Tetrahydrofuran As P2-Ligand Grl-004-11A
    Other atoms: Cl (3);
  10. 5dgw (Na: 1) - Crystal Structure of Hiv-1 Protease Inhibitor Grl-105-11A Containing Substituted Fused-Tetrahydropyranyl Tetrahydrofuran As P2-Ligand
    Other atoms: Cl (3);
  11. 5dib (Na: 3) - 2.25 Angstrom Resolution Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) Y450L Point Mutant From Staphylococcus Aureus in Complex with Nad+ and Bme-Modified CYS289
  12. 5dip (Na: 3) - Crystal Structure of LPG0406 in Reduced Form From Legionella Pneumophila
  13. 5djf (Na: 1) - Structure of M. Tuberculosis Cysq, A Pap Phosphatase - Ligand-Free Structure
  14. 5djj (Na: 1) - Structure of M. Tuberculosis Cysq, A Pap Phosphatase with PO4 and 2MG Bound
    Other atoms: Mg (2);
  15. 5djk (Na: 1) - Structure of M. Tuberculosis Cysq, A Pap Phosphatase with PO4 and 2CA Bound
    Other atoms: Ca (2);
  16. 5dkp (Na: 3) - Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556.
    Other atoms: K (28);
  17. 5dkt (Na: 1) - N-Terminal His Tagged Appol Exonuclease Mutant
  18. 5dld (Na: 1) - Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp
  19. 5dll (Na: 1) - Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4
    Other atoms: Zn (1); Cl (15);
  20. 5dlt (Na: 2) - Crystal Structure of Autotaxin (ENPP2) with 7-Alpha-Hydroxycholesterol
    Other atoms: Zn (2); I (10); Ca (1);
  21. 5dlv (Na: 4) - Crystal Structure of Autotaxin (ENPP2) with Tauroursodeoxycholic Acid (Tudca)
    Other atoms: Zn (4); I (27); Ca (2);
  22. 5dlw (Na: 2) - Crystal Structure of Autotaxin (ENPP2) with Tauroursodeoxycholic Acid (Tudca) and Lysophosphatidic Acid (Lpa)
    Other atoms: Zn (2); I (13); Ca (1);
  23. 5dm9 (Na: 1) - Xfel Structure of Hen Egg-White Lysozyme Solved Using A Droplet Injector at Sacla
    Other atoms: Cl (2);
  24. 5dmu (Na: 1) - Structure of the Nhej Polymerase From Methanocella Paludicola
  25. 5dmy (Na: 3) - Beta-Galactosidase - Construct 33-930
    Other atoms: Ni (1); Mg (5);
  26. 5dn5 (Na: 1) - Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj
    Other atoms: I (10); Cl (2);
  27. 5dnu (Na: 3) - Crystal Structure of Striga KAI2-Like Protein in Complex with Karrikin
  28. 5dnw (Na: 3) - Crystal Structure of KAI2-Like Protein From Striga (Apo State 1)
  29. 5dow (Na: 5) - Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
    Other atoms: Cl (11); Ca (16);
  30. 5dpg (Na: 2) - Sfgfp Mutant - 133 P-Cyano-L-Phenylalanine
  31. 5dqb (Na: 1) - Green/Cyan Wascfp at pH 8.0
  32. 5drf (Na: 1) - Green/Cyan Wascfp-PH5.5 at pH 5.5
  33. 5drg (Na: 1) - Green/Cyan Wascfp at pH 10.0
  34. 5drh (Na: 1) - Crystal Structure of Apo C-As Lyase
  35. 5dtb (Na: 1) - Crystal Structure of the Drosophila CG3822 KAIR1D Ligand Binding Domain Complex with Glutamate
  36. 5dvz (Na: 4) - Holo Trpb From Pyrococcus Furiosus
  37. 5dw0 (Na: 4) - Trpb From Pyrococcus Furiosus with L-Serine Bound As the External Aldimine
  38. 5dw1 (Na: 2) - X-Ray Crystal Structure of Human BRD2(BD2) in Complex with RVX297 to 1.55 A Resolution
  39. 5dw3 (Na: 4) - Tryptophan Synthase Beta-Subunit From Pyrococcus Furiosus with Product L-Tryptophan Non-Covalently Bound in the Active Site
  40. 5dwk (Na: 1) - Diacylglycerol Kinase Solved By Multi Crystal Multi Orientation Native Sad
    Other atoms: Zn (1);
Page generated: Wed Nov 4 05:33:36 2020

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