Sodium in PDB, part 141 (files: 5601-5640),
PDB 5ddq-5dy9
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 5601-5640 (PDB 5ddq-5dy9).
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5ddq (Na: 12) - L-Glutamine Riboswitch Bound with L-Glutamine Soaked with MN2+
Other atoms:
Mg (3);
Mn (5);
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5ddr (Na: 4) - L-Glutamine Riboswitch Bound with L-Glutamine Soaked with Cs+
Other atoms:
Mg (11);
K (7);
Cs (7);
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5dgq (Na: 2) - Crystal Structure of GH9 Exo-Beta-D-Glucosaminidase PBPRA0520
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5dgr (Na: 2) - Crystal Structure of GH9 Exo-Beta-D-Glucosaminidase PBPRA0520, Glucosamine Complex
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5dgu (Na: 2) - Crystal Structure of Hiv-1 Protease Inhibitors Containing Substituted Fused-Tetrahydropyranyl Tetrahydrofuran As P2-Ligand Grl-004-11A
Other atoms:
Cl (3);
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5dgw (Na: 1) - Crystal Structure of Hiv-1 Protease Inhibitor Grl-105-11A Containing Substituted Fused-Tetrahydropyranyl Tetrahydrofuran As P2-Ligand
Other atoms:
Cl (3);
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5dib (Na: 3) - 2.25 Angstrom Resolution Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) Y450L Point Mutant From Staphylococcus Aureus in Complex with Nad+ and Bme-Modified CYS289
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5dip (Na: 3) - Crystal Structure of LPG0406 in Reduced Form From Legionella Pneumophila
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5djf (Na: 1) - Structure of M. Tuberculosis Cysq, A Pap Phosphatase - Ligand-Free Structure
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5djj (Na: 1) - Structure of M. Tuberculosis Cysq, A Pap Phosphatase with PO4 and 2MG Bound
Other atoms:
Mg (2);
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5djk (Na: 1) - Structure of M. Tuberculosis Cysq, A Pap Phosphatase with PO4 and 2CA Bound
Other atoms:
Ca (2);
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5dkp (Na: 3) - Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556.
Other atoms:
K (28);
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5dkt (Na: 1) - N-Terminal His Tagged Appol Exonuclease Mutant
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5dld (Na: 1) - Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp
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5dll (Na: 1) - Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4
Other atoms:
Zn (1);
Cl (15);
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5dlt (Na: 2) - Crystal Structure of Autotaxin (ENPP2) with 7-Alpha-Hydroxycholesterol
Other atoms:
Zn (2);
I (10);
Ca (1);
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5dlv (Na: 4) - Crystal Structure of Autotaxin (ENPP2) with Tauroursodeoxycholic Acid (Tudca)
Other atoms:
Zn (4);
I (27);
Ca (2);
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5dlw (Na: 2) - Crystal Structure of Autotaxin (ENPP2) with Tauroursodeoxycholic Acid (Tudca) and Lysophosphatidic Acid (Lpa)
Other atoms:
Zn (2);
I (13);
Ca (1);
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5dm9 (Na: 1) - Xfel Structure of Hen Egg-White Lysozyme Solved Using A Droplet Injector at Sacla
Other atoms:
Cl (2);
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5dmu (Na: 1) - Structure of the Nhej Polymerase From Methanocella Paludicola
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5dmy (Na: 3) - Beta-Galactosidase - Construct 33-930
Other atoms:
Ni (1);
Mg (5);
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5dn5 (Na: 1) - Structure of A C-Terminally Truncated Glycoside Hydrolase Domain From Salmonella Typhimurium Flgj
Other atoms:
I (10);
Cl (2);
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5dnu (Na: 3) - Crystal Structure of Striga KAI2-Like Protein in Complex with Karrikin
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5dnw (Na: 3) - Crystal Structure of KAI2-Like Protein From Striga (Apo State 1)
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5dow (Na: 5) - Solution of the Variably-Twinned Structure of A Novel Calmodulin- Peptide Complex in A Novel Configuration
Other atoms:
Cl (11);
Ca (16);
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5dpg (Na: 2) - Sfgfp Mutant - 133 P-Cyano-L-Phenylalanine
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5dqb (Na: 1) - Green/Cyan Wascfp at pH 8.0
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5drf (Na: 1) - Green/Cyan Wascfp-PH5.5 at pH 5.5
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5drg (Na: 1) - Green/Cyan Wascfp at pH 10.0
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5drh (Na: 1) - Crystal Structure of Apo C-As Lyase
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5dtb (Na: 1) - Crystal Structure of the Drosophila CG3822 KAIR1D Ligand Binding Domain Complex with Glutamate
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5dvz (Na: 4) - Holo Trpb From Pyrococcus Furiosus
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5dw0 (Na: 4) - Trpb From Pyrococcus Furiosus with L-Serine Bound As the External Aldimine
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5dw1 (Na: 2) - X-Ray Crystal Structure of Human BRD2(BD2) in Complex with RVX297 to 1.55 A Resolution
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5dw3 (Na: 4) - Tryptophan Synthase Beta-Subunit From Pyrococcus Furiosus with Product L-Tryptophan Non-Covalently Bound in the Active Site
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5dwk (Na: 1) - Diacylglycerol Kinase Solved By Multi Crystal Multi Orientation Native Sad
Other atoms:
Zn (1);
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5dwz (Na: 1) - Structural and Functional Characterization of Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal
Other atoms:
Cl (2);
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5dx5 (Na: 1) - Crystal Structure of Methionine Gamma-Lyase From Clostridium Sporogenes
Other atoms:
Cl (2);
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5dxd (Na: 2) - Crystal Structure of Putative Beta-Glucanase (RV0315 Ortholog) From Mycobacterium Abscessus
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5dy9 (Na: 2) - Y68T Hfq From Methanococcus Jannaschii in Complex with Amp
Other atoms:
Cl (5);
Page generated: Sun Dec 15 11:38:04 2024
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