Sodium in PDB 5dwz: Structural and Functional Characterization of Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal

Enzymatic activity of Structural and Functional Characterization of Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal

All present enzymatic activity of Structural and Functional Characterization of Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal:
2.3.1.180;

Protein crystallography data

The structure of Structural and Functional Characterization of Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal, PDB code: 5dwz was solved by S.L.Drees, C.Li, F.Prasetya, M.Saleem, I.Dreveny, U.Hennecke, P.Williams, J.Emsley, S.Fetzner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 144.84 / 2.04
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.486, 114.960, 289.675, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23.7

Other elements in 5dwz:

The structure of Structural and Functional Characterization of Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Structural and Functional Characterization of Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal (pdb code 5dwz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural and Functional Characterization of Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal, PDB code: 5dwz:

Sodium binding site 1 out of 1 in 5dwz

Go back to Sodium Binding Sites List in 5dwz
Sodium binding site 1 out of 1 in the Structural and Functional Characterization of Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural and Functional Characterization of Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Na402

b:35.7
occ:1.00
 O E:HOH628 2.1 37.5 1.0
O E:LEU165 2.2 31.0 1.0
O E:HOH535 2.4 29.8 1.0
O E:HOH556 2.5 33.4 1.0
C E:LEU165 3.3 30.7 1.0
O E:GLY166 3.7 30.6 1.0
O E:HOH596 4.0 48.2 1.0
N E:GLY166 4.1 30.7 1.0
NH1 E:ARG212 4.1 39.0 1.0
CA E:GLY166 4.2 32.9 1.0
C E:GLY166 4.2 30.8 1.0
CA E:PRO169 4.2 36.0 1.0
N E:LEU165 4.3 28.6 1.0
CB E:ALA164 4.3 30.9 1.0
CA E:LEU165 4.3 29.2 1.0
NH2 E:ARG212 4.3 38.3 1.0
O E:HOH501 4.4 40.3 1.0
O E:ASP168 4.7 31.3 1.0
N E:PRO169 4.7 38.0 1.0
O E:GLY167 4.7 39.4 1.0
CZ E:ARG212 4.8 38.0 1.0
CB E:LEU165 4.8 30.0 1.0
C E:ALA164 4.8 28.8 1.0
NE1 E:TRP173 4.8 31.1 1.0
C E:ASP168 4.9 32.9 1.0
CB E:PRO169 5.0 42.6 1.0

Reference:

S.L.Drees, C.Li, F.Prasetya, M.Saleem, I.Dreveny, P.Williams, U.Hennecke, J.Emsley, S.Fetzner. Pqsbc, A Condensing Enzyme in the Biosynthesis of the Pseudomonas Aeruginosa Quinolone Signal: Crystal Structure, Inhibition, and Reaction Mechanism. J.Biol.Chem. V. 291 6610 2016.
ISSN: ESSN 1083-351X
PubMed: 26811339
DOI: 10.1074/JBC.M115.708453
Page generated: Tue Dec 15 10:52:14 2020

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