Sodium in PDB 5djf: Structure of M. Tuberculosis Cysq, A Pap Phosphatase - Ligand-Free Structure

All present enzymatic activity of Structure of M. Tuberculosis Cysq, A Pap Phosphatase - Ligand-Free Structure:
3.1.3.11; 3.1.3.25; 3.1.3.7;

The structure of Structure of M. Tuberculosis Cysq, A Pap Phosphatase - Ligand-Free Structure, PDB code: 5djf was solved by A.I.Erickson, A.J.Fisher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.20 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.320, 57.900, 101.680, 90.00, 90.00, 90.00
R / Rfree (%)	16.2 / 20

The binding sites of Sodium atom in the Structure of M. Tuberculosis Cysq, A Pap Phosphatase - Ligand-Free Structure (pdb code 5djf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of M. Tuberculosis Cysq, A Pap Phosphatase - Ligand-Free Structure, PDB code: 5djf:

Sodium binding site 1 out of 1 in the Structure of M. Tuberculosis Cysq, A Pap Phosphatase - Ligand-Free Structure


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of M. Tuberculosis Cysq, A Pap Phosphatase - Ligand-Free Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:27.8 occ:1.00 OD2 A:ASP50 2.4 38.5 1.0 O A:HOH556 2.4 41.6 1.0 O A:LEU93 2.5 11.5 1.0 OD1 A:ASP91 2.6 12.3 1.0 OE1 A:GLU73 2.6 15.4 1.0 CG A:ASP50 3.1 19.1 1.0 OD1 A:ASP50 3.1 20.2 1.0 CD A:GLU73 3.2 15.3 1.0 C A:LEU93 3.5 11.3 1.0 CG A:ASP91 3.5 10.9 1.0 OD2 A:ASP91 3.7 15.0 1.0 CG A:GLU73 3.7 12.7 1.0 N A:LEU93 3.9 9.4 1.0 OE2 A:GLU73 3.9 17.0 1.0 CA A:LEU93 4.1 12.0 1.0 CB A:GLU73 4.2 10.5 1.0 CB A:LEU93 4.3 8.9 1.0 CB A:ASP50 4.5 11.7 1.0 N A:ASP94 4.5 7.4 1.0 CG2 A:THR96 4.6 21.6 1.0 CD A:PRO92 4.8 7.6 1.0 OE1 A:GLU74 4.8 33.7 1.0 N A:PRO92 4.8 10.0 1.0 CA A:ASP94 4.9 9.0 1.0 CB A:ASP91 4.9 9.1 1.0

A.I.Erickson, R.D.Sarsam, A.J.Fisher. Crystal Structures of Mycobacterium Tuberculosis Cysq, with Substrate and Products Bound. Biochemistry V. 54 6830 2015.
ISSN: ISSN 0006-2960
PubMed: 26512869
DOI: 10.1021/ACS.BIOCHEM.5B01000