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PDB 5ddq-5dy9 »
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Sodium in PDB 5dkp: Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556.
Enzymatic activity of Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556.
All present enzymatic activity of Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556.:
3.4.21.92;
3.4.21.92;
Protein crystallography data
The structure of Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556., PDB code: 5dkp
was solved by
J.D.Goodreid,
J.Janetzko,
J.P.Santa Maria Jr.,
K.Wong,
E.Leung,
B.T.Eger,
S.Bryson,
E.F.Pai,
S.D.Gray-Owen,
S.Walker,
W.A.Houry,
R.A.Batey,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 42.40 / 2.38 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 117.640, 198.850, 144.040, 90.00, 97.81, 90.00 |
| R / Rfree (%) | 19.6 / 23.9 |
Other elements in 5dkp:
The structure of Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556. also contains other interesting chemical elements:
| Potassium | (K) | 28 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556.
(pdb code 5dkp). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556., PDB code: 5dkp:
Jump to Sodium binding site number: 1; 2; 3;
In total 3 binding sites of Sodium where determined in the Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556., PDB code: 5dkp:
Jump to Sodium binding site number: 1; 2; 3;
Sodium binding site 1 out of 3 in 5dkp
Go back to
Sodium Binding Sites List in 5dkp
Sodium binding site 1 out
of 3 in the Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556. within 5.0Å range:
|
Sodium binding site 2 out of 3 in 5dkp
Go back to
Sodium Binding Sites List in 5dkp
Sodium binding site 2 out
of 3 in the Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556. within 5.0Å range:
|
Sodium binding site 3 out of 3 in 5dkp
Go back to
Sodium Binding Sites List in 5dkp
Sodium binding site 3 out
of 3 in the Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556.
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Crystal Structure of N. Meningitidis Clpp in Complex with Agonist Adep A54556. within 5.0Å range:
|
Reference:
J.D.Goodreid,
J.Janetzko,
J.P.Santa Maria,
K.S.Wong,
E.Leung,
B.T.Eger,
S.Bryson,
E.F.Pai,
S.D.Gray-Owen,
S.Walker,
W.A.Houry,
R.A.Batey.
Development and Characterization of Potent Cyclic Acyldepsipeptide Analogues with Increased Antimicrobial Activity. J.Med.Chem. V. 59 624 2016.
ISSN: ISSN 0022-2623
PubMed: 26818454
DOI: 10.1021/ACS.JMEDCHEM.5B01451
Page generated: Tue Dec 15 10:49:19 2020
ISSN: ISSN 0022-2623
PubMed: 26818454
DOI: 10.1021/ACS.JMEDCHEM.5B01451
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