Sodium in PDB 5dld: Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp

Enzymatic activity of Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp

All present enzymatic activity of Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp:
5.1.3.14;

Protein crystallography data

The structure of Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp, PDB code: 5dld was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	27.31 / 1.45
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	116.000, 81.410, 55.160, 90.00, 98.03, 90.00
*R / R_free (%)*	13.4 / 15.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp (pdb code 5dld). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp, PDB code: 5dld:

Sodium binding site 1 out of 1 in 5dld

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Sodium Binding Sites List in 5dld

Sodium binding site 1 out of 1 in the Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na507 b:36.2 occ:1.00	O	A:HOH611	2.3	22.6	1.0
	O	A:LYS25	2.4	19.0	1.0
	O	A:ARG27	2.4	18.7	1.0
	O	A:HOH922	2.5	39.2	1.0
	O	A:HOH699	2.6	35.7	1.0
	O	A:HOH931	2.6	33.9	1.0
	C	A:LYS25	3.3	16.3	1.0
	O	A:VAL30	3.5	22.1	1.0
	C	A:ARG27	3.6	17.1	1.0
	CA	A:LYS25	3.9	15.8	1.0
	O	A:HOH754	3.9	31.3	1.0
	O	A:LEU24	4.0	14.3	1.0
	N	A:ARG27	4.1	17.4	1.0
	C	A:ALA26	4.2	18.0	1.0
	N	A:ALA26	4.4	16.4	1.0
	CA	A:ARG27	4.4	16.9	1.0
	N	A:ALA28	4.5	15.4	1.0
	O	A:HOH935	4.5	47.5	1.0
	O	A:ALA26	4.6	20.1	1.0
	CA	A:ALA28	4.6	15.9	1.0
	C	A:VAL30	4.7	20.1	1.0
	CA	A:ALA26	4.7	17.5	1.0
	CB	A:LYS25	4.9	17.7	1.0
	C	A:LEU24	4.9	13.2	1.0
	N	A:LYS25	4.9	13.4	1.0

Reference:

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), D.M.Dranow, J.W.Fairman, D.Lorimer, T.E.Edwards. Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp To Be Published.

Page generated: Mon Oct 7 20:37:53 2024

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