Sodium in PDB 5dld: Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp

Enzymatic activity of Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp

All present enzymatic activity of Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp:
5.1.3.14;

Protein crystallography data

The structure of Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp, PDB code: 5dld was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	27.31 / 1.45
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	116.000, 81.410, 55.160, 90.00, 98.03, 90.00
*R / R_free (%)*	13.4 / 15.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp (pdb code 5dld). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp, PDB code: 5dld:

Sodium binding site 1 out of 1 in 5dld

Go back to

Sodium Binding Sites List in 5dld

Sodium binding site 1 out of 1 in the Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na507 b:36.2 occ:1.00	O	A:HOH611	2.3	22.6	1.0
	O	A:LYS25	2.4	19.0	1.0
	O	A:ARG27	2.4	18.7	1.0
	O	A:HOH922	2.5	39.2	1.0
	O	A:HOH699	2.6	35.7	1.0
	O	A:HOH931	2.6	33.9	1.0
	C	A:LYS25	3.3	16.3	1.0
	O	A:VAL30	3.5	22.1	1.0
	C	A:ARG27	3.6	17.1	1.0
	CA	A:LYS25	3.9	15.8	1.0
	O	A:HOH754	3.9	31.3	1.0
	O	A:LEU24	4.0	14.3	1.0
	N	A:ARG27	4.1	17.4	1.0
	C	A:ALA26	4.2	18.0	1.0
	N	A:ALA26	4.4	16.4	1.0
	CA	A:ARG27	4.4	16.9	1.0
	N	A:ALA28	4.5	15.4	1.0
	O	A:HOH935	4.5	47.5	1.0
	O	A:ALA26	4.6	20.1	1.0
	CA	A:ALA28	4.6	15.9	1.0
	C	A:VAL30	4.7	20.1	1.0
	CA	A:ALA26	4.7	17.5	1.0
	CB	A:LYS25	4.9	17.7	1.0
	C	A:LEU24	4.9	13.2	1.0
	N	A:LYS25	4.9	13.4	1.0

Reference:

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), D.M.Dranow, J.W.Fairman, D.Lorimer, T.E.Edwards. Crystal Structure of A Udp-N-Acetylglucosamine 2-Epimerase From Burkholderia Vietnamiensis Complexed with Udp-Glcnac and Udp To Be Published.

Page generated: Mon Oct 7 20:37:53 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy