Sodium in PDB, part 132 (files: 5241-5280),
PDB 4xtl-4yia
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 5241-5280 (PDB 4xtl-4yia).
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4xtl (Na: 1) - Crystal Structure of the Light-Driven Sodium Pump KR2 in the Monomeric Blue Form, pH 4.3
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4xtn (Na: 10) - Crystal Structure of the Light-Driven Sodium Pump KR2 in the Pentameric Red Form, pH 4.9
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4xto (Na: 5) - Crystal Structure of the Light-Driven Sodium Pump KR2 in the Pentameric Red Form, pH 5.6
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4xul (Na: 1) - Crystal Structure of M. Chilensis MG662 Protein Complexed with Gtp
Other atoms:
Mg (2);
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4xvk (Na: 1) - Binary Complex of Human Polymerase Nu and Dna with the Finger Domain Closed
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4xvl (Na: 1) - Binary Complex of Human Polymerase Nu and Dna with the Finger Domain Open
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4xwi (Na: 1) - X-Ray Crystal Structure of Cmp-Kdo Synthase From Pseudomonas Aeruginosa
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4xwx (Na: 1) - Crystal Structure of the Ptb Domain of Shc
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4xxn (Na: 1) - Structure of Pe-Ppe Domains of Esx-1 Secreted Protein Espb, I222
Other atoms:
Cl (1);
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4xym (Na: 1) - Ca. Korarchaeum Cryptofilum Dinucleotide Forming Acetyl-Coenzyme A Synthetase 1 in Complex with Coenzyme A, Ca-Ampcp and Hgcl+
Other atoms:
Hg (8);
Ca (2);
Cl (6);
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4y0w (Na: 4) - Yeaz From Pseudomonas Aeruginosa
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4y23 (Na: 1) - Crystal Structure of T399A Precursor Mutant Protein of Gamma-Glutamyl Transpeptidase From Bacillus Licheniformis
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4y5l (Na: 1) - Endothiapepsin in Its Apo Form
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4y6g (Na: 1) - Crystal Structure of Tryptophan Synthase From Salmonella Typhimurium in Complex with N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1- Ethylphosphate (F6F) Inhibitor in the Alpha-Site and Beta-Site.
Other atoms:
F (6);
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4y7d (Na: 2) - Alpha/Beta Hydrolase Fold Protein From Nakamurella Multipartita
Other atoms:
Cl (2);
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4y8f (Na: 3) - Crystal Structure of Triosephosphate Isomerase From Clostridium Perfringens
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4y90 (Na: 3) - Crystal Structure of Triosephosphate Isomerase From Deinococcus Radiodurans
Other atoms:
Ca (5);
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4y96 (Na: 3) - Crystal Structure of Triosephosphate Isomerase From Gemmata Obscuriglobus
Other atoms:
Ca (1);
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4y9v (Na: 1) - GP54 Tailspike of Acinetobacter Baumannii Bacteriophage AP22 in Complex with A. Baumannii Capsular Saccharide
Other atoms:
Cl (3);
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4yaj (Na: 2) - Ca. Korarchaeum Cryptofilum Dinucleotide Forming Acetyl-Coenzyme A Synthetase 1 (Apo Form)
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4yar (Na: 1) - 2-Hydroxyethylphosphonate Dioxygenase (Hepd) E176H
Other atoms:
Cd (10);
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4yb8 (Na: 3) - Ca. Korarchaeum Cryptofilum Dinucleotide Forming Acetyl-Coenzyme A Synthetase 1 in Complex with Phosphate and Adp
Other atoms:
Mg (2);
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4ycm (Na: 1) - Crystal Structure of the Calcium Pump with Bound Marine Macrolide Bls
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4ycn (Na: 1) - Crystal Structure of the Calcium Pump with Bound Marine Macrolide Bllb
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4ycs (Na: 1) - Crystal Structure of Putative Lipoprotein From Peptoclostridium Difficile 630 (Fragment)
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4ycx (Na: 1) - Binary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate
Other atoms:
Mg (1);
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4yd1 (Na: 1) - Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp
Other atoms:
Mg (3);
Cl (4);
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4yd2 (Na: 3) - Nicked Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate
Other atoms:
Cl (3);
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4ydd (Na: 1) - Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps
Other atoms:
Mo (3);
Fe (57);
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4ydj (Na: 1) - Crystal Structure of Broadly and Potently Neutralizing Antibody 44- VRC13.01 in Complex with Hiv-1 Clade Ae Strain 93TH057 GP120
Other atoms:
Cl (1);
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4ydr (Na: 1) - Crystal Structure of Oxidized Homoserine Dehydrogenase of Sulfolobus Tokodaii
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4yej (Na: 3) - Tailspike Protein Double Mutant D339A/E372Q of E. Coli Bacteriophage HK620 in Complex with Pentasaccharide
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4yel (Na: 3) - Tailspike Protein Double Mutant D339A/E372A of E. Coli Bacteriophage HK620 in Complex with Hexasaccharide
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4yem (Na: 1) - Carboplatin Binding to Hewl in Nabr Crystallisation Conditions Studied at An X-Ray Wavelength of 0.9163A - New Refinement
Other atoms:
Br (19);
Pt (3);
Cl (1);
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4yf1 (Na: 2) - 1.85 Angstrom Crystal Structure of LMO0812 From Listeria Monocytogenes Egd-E
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4yh4 (Na: 1) - Crystal Structure of Human BRD4(1) in Complex with 4-[(5- Phenylpyridin-3-Yl)Carbonyl]-3,4-Dihydroquinoxalin-2(1H)-One (Compound 19D)
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4yhf (Na: 24) - Bruton'S Tyrosine Kinase in Complex with A T-Butyl Cyanoacrylamide Inhibitor
Other atoms:
Cl (7);
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4yhq (Na: 1) - Crystal Structure of Multidrug Resistant Clinical Isolate PR20 with Grl-5010A
Other atoms:
F (4);
Y (4);
Cl (5);
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4yi9 (Na: 1) - Crystal Structure of Non-Myristoylated E153A Recoverin at 1.35 A Resolution with A Sodium Ion Bound to Ef-Hand 2 and Calcium Ion Bound to Ef-Hand 3
Other atoms:
Ca (1);
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4yia (Na: 2) - Structural Mechanism of Hormone Release in Thyroxine Binding Globulin
Other atoms:
Cl (3);
Ca (2);
Page generated: Sun Dec 15 11:37:44 2024
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