Sodium in PDB 4ydd: Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps

The structure of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps, PDB code: 4ydd was solved by C.-L.Tsai, M.D.Youngblut, J.A.Tainer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.35 / 1.86
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	132.827, 175.501, 193.160, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 23.7

The structure of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps also contains other interesting chemical elements:

Molybdenum	(Mo)	3 atoms
Iron	(Fe)	57 atoms

The binding sites of Sodium atom in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps (pdb code 4ydd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps, PDB code: 4ydd:

Sodium binding site 1 out of 1 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range: probe atom residue distance (Å) B Occ B:Na407 b:35.4 occ:1.00 O B:HOH523 2.1 27.6 1.0 O B:GLY102 3.1 24.7 1.0 HB2 B:ARG95 3.2 24.9 1.0 O B:PRO101 3.5 33.5 1.0 HB2 B:LYS100 3.7 33.6 1.0 HB3 B:LYS100 3.9 33.6 1.0 O B:ARG103 3.9 18.2 1.0 C B:GLY102 3.9 26.0 1.0 O B:HOH812 4.0 32.7 1.0 HA3 B:GLY102 4.0 36.9 1.0 H B:ARG95 4.0 25.7 1.0 CB B:ARG95 4.1 20.7 1.0 N B:ARG95 4.2 21.4 1.0 C B:PRO101 4.2 30.2 1.0 HG22 B:VAL104 4.2 22.8 1.0 CB B:LYS100 4.3 28.0 1.0 HD2 B:LYS100 4.3 41.4 1.0 HD3 B:ARG95 4.3 26.2 1.0 HA B:VAL104 4.3 21.9 1.0 HA B:ARG95 4.3 25.6 1.0 HA3 B:GLY94 4.4 30.4 1.0 CA B:GLY102 4.4 30.7 1.0 HB3 B:ASP91 4.4 29.6 1.0 O B:HOH512 4.4 37.4 1.0 CA B:ARG95 4.5 21.4 1.0 O B:LYS100 4.5 27.1 1.0 O B:ASP91 4.5 19.5 1.0 C B:ARG103 4.5 19.4 1.0 HB3 B:ARG95 4.5 24.9 1.0 O E:HOH1676 4.6 31.4 1.0 N B:GLY102 4.7 29.4 1.0 OD2 B:ASP91 4.7 28.9 1.0 C B:LYS100 4.7 27.5 1.0 O B:HOH638 4.8 27.9 1.0 C B:GLY94 4.8 23.6 1.0 N B:ARG103 4.9 23.9 1.0 HD3 B:LYS100 5.0 41.4 1.0 CD B:ARG95 5.0 21.8 1.0 CD B:LYS100 5.0 34.5 1.0

M.D.Youngblut, C.L.Tsai, I.C.Clark, H.K.Carlson, A.P.Maglaqui, P.S.Gau-Pan, S.A.Redford, A.Wong, J.A.Tainer, J.D.Coates. Perchlorate Reductase Is Distinguished By Active Site Aromatic Gate Residues. J.Biol.Chem. V. 291 9190 2016.
ISSN: ESSN 1083-351X
PubMed: 26940877
DOI: 10.1074/JBC.M116.714618