Sodium in PDB 4yf1: 1.85 Angstrom Crystal Structure of LMO0812 From Listeria Monocytogenes Egd-E

The structure of 1.85 Angstrom Crystal Structure of LMO0812 From Listeria Monocytogenes Egd-E, PDB code: 4yf1 was solved by S.N.Krishna, S.H.Light, E.V.Filippova, G.Minasov, O.Kiryukhina, R.Jedrzejczak, A.Joachimiak, W.F.Anderson, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.34 / 1.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	87.811, 58.675, 95.730, 90.00, 114.31, 90.00
R / Rfree (%)	18 / 20.8

The binding sites of Sodium atom in the 1.85 Angstrom Crystal Structure of LMO0812 From Listeria Monocytogenes Egd-E (pdb code 4yf1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the 1.85 Angstrom Crystal Structure of LMO0812 From Listeria Monocytogenes Egd-E, PDB code: 4yf1:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the 1.85 Angstrom Crystal Structure of LMO0812 From Listeria Monocytogenes Egd-E


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.85 Angstrom Crystal Structure of LMO0812 From Listeria Monocytogenes Egd-E within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:48.5 occ:1.00 O A:VAL55 2.3 40.7 1.0 O A:THR58 2.4 43.3 1.0 O A:MSE60 2.4 45.3 1.0 C A:VAL55 3.4 40.6 1.0 C A:THR58 3.6 46.5 1.0 C A:MSE60 3.6 46.4 1.0 C A:GLU59 3.7 52.0 1.0 N A:MSE60 3.9 50.6 1.0 CA A:VAL55 3.9 38.5 1.0 CA A:GLU59 4.0 54.1 1.0 O A:GLU59 4.0 52.8 1.0 CG1 A:VAL55 4.2 39.1 1.0 N A:GLU59 4.2 49.4 1.0 CA A:MSE60 4.4 49.6 1.0 O A:ALA54 4.4 36.8 1.0 N A:THR61 4.5 44.7 1.0 N A:GLU56 4.5 41.7 1.0 N A:THR58 4.6 45.0 1.0 CA A:THR61 4.6 42.8 1.0 CA A:THR58 4.7 45.4 1.0 CB A:VAL55 4.7 37.8 1.0 CA A:GLU56 4.8 44.6 1.0 OE2 A:GLU59 4.8 71.4 1.0 C A:GLU56 4.9 45.0 1.0 O A:HOH403 5.0 43.5 1.0 O A:GLU56 5.0 45.0 1.0

Sodium binding site 2 out of 2 in the 1.85 Angstrom Crystal Structure of LMO0812 From Listeria Monocytogenes Egd-E


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 1.85 Angstrom Crystal Structure of LMO0812 From Listeria Monocytogenes Egd-E within 5.0Å range: probe atom residue distance (Å) B Occ B:Na202 b:40.3 occ:1.00 O B:HOH427 2.2 47.3 1.0 O B:VAL55 2.3 36.6 1.0 O B:HOH426 2.3 64.3 1.0 O B:MSE60 2.4 40.1 1.0 O B:THR58 2.4 44.1 1.0 C B:VAL55 3.4 37.1 1.0 C B:MSE60 3.5 40.3 1.0 C B:THR58 3.6 44.9 1.0 C B:GLU59 3.7 46.6 1.0 N B:MSE60 3.9 44.1 1.0 CA B:VAL55 3.9 35.6 1.0 CA B:GLU59 4.0 49.5 1.0 O B:GLU59 4.0 48.5 1.0 CG1 B:VAL55 4.1 39.5 1.0 N B:GLU59 4.2 46.9 1.0 CA B:MSE60 4.3 43.0 1.0 N B:THR61 4.4 38.5 1.0 O B:ALA54 4.5 33.5 1.0 N B:GLU56 4.5 38.1 1.0 N B:THR58 4.5 42.2 1.0 CA B:THR61 4.6 38.2 1.0 CB B:VAL55 4.7 36.5 1.0 CA B:THR58 4.7 43.6 1.0 O B:GLU56 4.8 41.8 1.0 C B:GLU56 4.8 42.3 1.0 O B:HOH385 4.9 43.9 1.0 CA B:GLU56 4.9 40.8 1.0

S.N.Krishna, S.H.Light, E.V.Filippova, G.Minasov, O.Kiryukhina, R.Jedrzejczak, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics (Mcsg). 1.85 Angstrom Crystal Structure of LMO0812 From Listeria Monocytogenes Egd-E To Be Published.