Atomistry » Sodium » PDB 4xr9-4yhf » 4xxn
Atomistry »
  Sodium »
    PDB 4xr9-4yhf »
      4xxn »

Sodium in PDB 4xxn: Structure of Pe-Ppe Domains of Esx-1 Secreted Protein Espb, I222

Protein crystallography data

The structure of Structure of Pe-Ppe Domains of Esx-1 Secreted Protein Espb, I222, PDB code: 4xxn was solved by K.V.Korotkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 71.47 / 2.14
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 73.120, 93.070, 142.940, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 25.1

Other elements in 4xxn:

The structure of Structure of Pe-Ppe Domains of Esx-1 Secreted Protein Espb, I222 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Pe-Ppe Domains of Esx-1 Secreted Protein Espb, I222 (pdb code 4xxn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Pe-Ppe Domains of Esx-1 Secreted Protein Espb, I222, PDB code: 4xxn:

Sodium binding site 1 out of 1 in 4xxn

Go back to Sodium Binding Sites List in 4xxn
Sodium binding site 1 out of 1 in the Structure of Pe-Ppe Domains of Esx-1 Secreted Protein Espb, I222


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Pe-Ppe Domains of Esx-1 Secreted Protein Espb, I222 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na502

b:42.6
occ:1.00
O A:HOH616 2.7 38.0 1.0
OE1 A:GLU222 2.8 46.4 1.0
O A:GLU222 2.9 33.4 1.0
NE A:ARG256 3.2 32.1 1.0
CG A:ARG256 3.6 31.2 1.0
C A:GLU222 3.8 31.5 1.0
CD A:ARG256 3.8 32.6 1.0
CB A:ARG256 3.9 31.7 1.0
CD A:GLU222 3.9 43.8 1.0
CB A:GLU222 4.0 34.1 1.0
CA A:GLU222 4.0 32.7 1.0
CZ A:ARG256 4.1 31.9 1.0
NH2 A:ARG256 4.1 33.5 1.0
CA A:ARG256 4.5 32.9 1.0
CG A:GLU222 4.6 38.6 1.0
O A:ARG256 4.8 32.4 1.0
OE2 A:GLU222 4.9 46.4 1.0
N A:HIS223 4.9 29.8 1.0

Reference:

N.Korotkova, J.Piton, J.M.Wagner, S.Boy-Rottger, A.Japaridze, T.J.Evans, S.T.Cole, F.Pojer, K.V.Korotkov. Structure of Espb, A Secreted Substrate of the Esx-1 Secretion System of Mycobacterium Tuberculosis. To Be Published.
Page generated: Tue Dec 15 10:01:07 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy