Sodium in PDB, part 125 (files: 4961-5000),
PDB 4tmw-4u9k
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 4961-5000 (PDB 4tmw-4u9k).
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4tmw (Na: 2) - Translation Initiation Factor EIF5B (517-858) From C. Thermophilum, Bound to Gtp and Sodium
Other atoms:
Mg (2);
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4tmx (Na: 2) - Translation Initiation Factor EIF5B (517-858) Mutant D533N From C. Thermophilum, Bound to Gtp and Sodium
Other atoms:
Mg (2);
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4tof (Na: 4) - 1.65A Resolution Structure of Bfrb (C89S, K96C) Crystal Form 1 From Pseudomonas Aeruginosa
Other atoms:
K (1);
Fe (4);
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4tog (Na: 4) - 1.80A Resolution Structure of Bfrb (C89S, K96C) Crystal Form 2 From Pseudomonas Aeruginosa
Other atoms:
K (1);
Fe (4);
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4tpr (Na: 1) - Structure of TAU5 Antibody Fab Fragment
Other atoms:
Cl (5);
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4tpu (Na: 4) - Crystal Structure of Ferredoxin-Dependent Disulfide Reductase From Methanosarcina Acetivorans
Other atoms:
Br (7);
Fe (5);
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4tpy (Na: 6) - High Throughput Screening Using Acoustic Droplet Ejection to Combine Protein Crystals and Chemical Libraries on Crystallization Plates at High Density
Other atoms:
Br (26);
Ca (1);
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4tqe (Na: 4) - Structure of Tau Peptide in Complex with TAU5 Antibody Fab Fragment
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4tr6 (Na: 1) - Crystal Structure of Dna Polymerase Sliding Clamp From Bacillus Subtilis
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4tr8 (Na: 1) - Crystal Structure of Dna Polymerase Sliding Clamp From Pseudomonas Aeruginosa
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4tro (Na: 2) - Structure of the Enoyl-Acp Reductase of Mycobacterium Tuberculosis Inha, Inhibited with the Active Metabolite of Isoniazid
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4ttt (Na: 1) - Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State) - 3
Other atoms:
Ni (1);
Mg (1);
Fe (12);
Cl (3);
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4ttu (Na: 1) - N-Terminally Truncated Dextransucrase Dsr-E From Leuconostoc Mesenteroides Nrrl B-1299 in Complex with Isomaltotriose
Other atoms:
I (3);
Ca (1);
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4tuo (Na: 2) - Crystal Structure of Monoclonal Antibody Against Neuroblastoma Associated Antigen.
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4tup (Na: 2) - Structure of Human Dna Polymerase Beta Complexed with Gg As the Template (GG0B) in A 1-Nucleotide Gapped Dna
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4tuq (Na: 2) - Human Dna Polymerase Beta Inserting Dcmpnpp Opposite Gg Template (GG0B).
Other atoms:
Mg (2);
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4tur (Na: 2) - Human Dna Polymerase Beta Inserting Dcmpnpp Opposite the 5'G of Cisplatin Crosslinked Gs (Pt-GG2)
Other atoms:
Mg (2);
Pt (1);
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4tus (Na: 2) - Human Dna Polymerase Beta Inserting Dcmpnpp Opposite the 5'G of Cisplatin Crosslinked Gs (Pt-GG2) with Manganese in the Active Site.
Other atoms:
Pt (1);
Mn (2);
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4tvc (Na: 1) - N-Terminally Truncated Dextransucrase Dsr-E From Leuconostoc Mesenteroides Nrrl B-1299 in Complex with Gluco-Oligosaccharides
Other atoms:
I (3);
Ca (1);
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4tvo (Na: 22) - Structure of Malate Dehydrogenase From Mycobacterium Tuberculosis
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4tvt (Na: 8) - New Ligand For Thaumatin Discovered Using Acoustic High Throughput Screening
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4tw6 (Na: 1) - The FK1 Domain of FKBP51 in Complex with IFIT1
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4tw9 (Na: 4) - Difluoro-Dioxolo-Benzoimidazol-Benzamides As Potent Inhibitors of CK1DELTA and Epsilon with Nanomolar Inhibitory Activity on Cancer Cell Proliferation
Other atoms:
F (10);
Cl (2);
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4twp (Na: 3) - The Crystal Structure of Human ABL1 T315I Gatekeeper Mutant Kinase Domain in Complex with Axitinib
Other atoms:
Ni (4);
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4tws (Na: 5) - Gadolinium Derivative of Tetragonal Hen Egg-Whote Lysozyme at 1.45 A Resolution
Other atoms:
Gd (3);
Cl (13);
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4txo (Na: 2) - Crystal Structure of the Mixed Disulfide Complex of Thioredoxin-Like Tlpas(C110S) and Copper Chaperone Scois(C74S)
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4u0p (Na: 1) - The Crystal Structure of Lipoyl Synthase in Complex with S-Adenosyl Homocysteine
Other atoms:
Fe (8);
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4u1p (Na: 1) - Human Fyn-SH2 Domain in Complex with A Synthetic High-Affinity Phospho-Peptide
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4u3e (Na: 1) - Anaerobic Ribonucleotide Reductase
Other atoms:
Zn (2);
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4u3z (Na: 1) - Apo MAP4K4 T181E Phosphomimetic Mutant
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4u44 (Na: 1) - MAP4K4 in Complex with Inhibitor (Compound 16)
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4u6b (Na: 1) - ZG3597, A Family 117 Glycoside Hydrolase, Produced By the Marine Bacterium Zobellia Galactanivorans
Other atoms:
Ca (8);
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4u6i (Na: 1) - Crystal Structure of the Eutl Microcompartment Shell Protein From Clostridium Perfringens Bound to Vitamin B12
Other atoms:
Co (1);
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4u7x (Na: 4) - Crystal Structure of Fructokinase From Brucella Abortus 2308
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4u89 (Na: 11) - 4'-Phosphopantetheinyl Transferase Pptt From Mycobacterium Tuberculosis
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4u8w (Na: 1) - Hiv-1 Wild Type Protease with Grl-050-10A (A Gem-Difluoro-Bis- Tetrahydrofuran As P2-Ligand)
Other atoms:
F (4);
Cl (3);
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4u99 (Na: 1) - Crystal Structure of An H-Nox Protein From S. Oneidensis in the Fe(II) Ligation State, Q154A/Q155A/K156A Mutant
Other atoms:
Zn (2);
Fe (2);
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4u9g (Na: 1) - Crystal Structure of An H-Nox Protein From S. Oneidensis in the Fe(II)Co Ligation State, Q154A/Q155A/K156A Mutant
Other atoms:
Zn (2);
Fe (2);
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4u9j (Na: 1) - Crystal Structure of An H-Nox Protein From S. Oneidensis in the Mn(II) Ligation State, Q154A/Q155A/K156A Mutant
Other atoms:
Mn (2);
Zn (2);
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4u9k (Na: 1) - Crystal Structure of An H-Nox Protein From S. Oneidensis in the Mn(II)No Ligation State, Q154A/Q155A/K156A Mutant
Other atoms:
Mn (2);
Zn (2);
Page generated: Wed Nov 13 13:01:57 2024
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