Sodium in PDB 4tuo: Crystal Structure of Monoclonal Antibody Against Neuroblastoma Associated Antigen.

The structure of Crystal Structure of Monoclonal Antibody Against Neuroblastoma Associated Antigen., PDB code: 4tuo was solved by P.Golik, P.Grudnik, I.Horwacik, M.Zdzalik, H.Rokita, G.Dubin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.28 / 1.55
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	58.087, 61.089, 65.358, 107.79, 113.43, 95.68
R / Rfree (%)	16.6 / 20.6

The binding sites of Sodium atom in the Crystal Structure of Monoclonal Antibody Against Neuroblastoma Associated Antigen. (pdb code 4tuo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Monoclonal Antibody Against Neuroblastoma Associated Antigen., PDB code: 4tuo:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Monoclonal Antibody Against Neuroblastoma Associated Antigen.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Monoclonal Antibody Against Neuroblastoma Associated Antigen. within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:22.8 occ:1.00 OG1 B:THR199 3.0 15.7 1.0 N B:GLY158 3.3 21.5 1.0 N B:ASP157 3.4 15.9 1.0 O B:LYS155 3.4 16.1 1.0 O B:SER197 3.5 14.2 1.0 CB B:SER197 3.7 19.3 1.0 CB B:THR199 3.7 13.3 1.0 C B:LYS155 3.8 14.4 1.0 C B:SER197 3.9 14.0 1.0 CB B:LYS155 3.9 16.4 1.0 CA B:ASP157 3.9 16.0 1.0 C B:ILE156 4.0 14.6 1.0 N B:ILE156 4.1 14.6 1.0 N B:THR199 4.1 12.2 1.0 CA B:ILE156 4.1 14.5 1.0 C B:ASP157 4.1 20.6 1.0 CA B:GLY158 4.3 20.8 1.0 O B:HOH570 4.3 27.6 1.0 N B:TYR198 4.3 12.5 1.0 O C:HOH376 4.4 24.2 1.0 C B:TYR198 4.4 11.6 1.0 CA B:SER197 4.4 16.1 1.0 CA B:TYR198 4.5 12.0 1.0 CA B:LYS155 4.6 15.0 1.0 CA B:THR199 4.6 11.8 1.0 OG B:SER214 4.7 13.3 0.5 OG B:SER197 4.8 28.4 1.0 O B:ILE156 4.9 14.0 1.0 CG2 B:THR199 5.0 14.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Monoclonal Antibody Against Neuroblastoma Associated Antigen.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Monoclonal Antibody Against Neuroblastoma Associated Antigen. within 5.0Å range: probe atom residue distance (Å) B Occ D:Na301 b:12.8 occ:1.00 N D:LEU9 3.3 14.4 1.0 N D:SER10 3.3 11.9 1.0 CB D:PRO8 3.8 15.0 1.0 O D:SER10 3.8 12.0 1.0 CA D:LEU9 3.9 14.5 1.0 CB D:LEU9 4.1 16.5 1.0 C D:LEU9 4.1 12.3 1.0 C D:PRO8 4.1 15.9 1.0 CA D:PRO8 4.2 15.7 1.0 CB D:SER10 4.2 14.7 1.0 CA D:SER10 4.2 13.1 1.0 C D:SER10 4.5 10.9 1.0 O D:HOH460 4.6 25.6 1.0 O D:HOH462 4.7 14.7 1.0 CG D:LEU9 5.0 18.9 1.0 CG D:PRO8 5.0 14.4 1.0

I.Horwacik, P.Golik, P.Grudnik, M.Kolinski, M.Zdzalik, H.Rokita, G.Dubin. Structural Basis of GD2 Ganglioside and Mimetic Peptide Recognition By 14G2A Antibody. Mol.Cell Proteomics V. 14 2577 2015.
ISSN: ESSN 1535-9484
PubMed: 26179345
DOI: 10.1074/MCP.M115.052720