Sodium in PDB 4u7x: Crystal Structure of Fructokinase From Brucella Abortus 2308

All present enzymatic activity of Crystal Structure of Fructokinase From Brucella Abortus 2308:
2.7.1.4;

The structure of Crystal Structure of Fructokinase From Brucella Abortus 2308, PDB code: 4u7x was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.47 / 2.10
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	103.900, 103.900, 61.510, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 25.2

The binding sites of Sodium atom in the Crystal Structure of Fructokinase From Brucella Abortus 2308 (pdb code 4u7x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of Fructokinase From Brucella Abortus 2308, PDB code: 4u7x:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Crystal Structure of Fructokinase From Brucella Abortus 2308


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Fructokinase From Brucella Abortus 2308 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:60.9 occ:1.00 O A:HOH542 3.1 37.9 1.0 OD2 A:ASP100 3.5 37.2 1.0 OD1 A:ASP100 3.8 37.7 1.0 CG A:ASP100 4.0 40.9 1.0 N A:ARG106 4.0 27.6 1.0 OG1 A:THR83 4.2 38.3 1.0 C A:GLY105 4.2 31.4 1.0 CA A:ARG106 4.2 36.6 1.0 CB A:GLU7 4.3 35.6 1.0 SG A:CYS135 4.4 31.2 1.0 CB A:ARG106 4.4 30.4 1.0 OG A:SER132 4.5 48.7 1.0 O A:GLY105 4.6 30.2 1.0 CA A:GLY105 4.6 32.7 1.0 CB A:SER132 4.8 42.5 1.0 O A:HOH532 4.8 31.1 1.0 CG1 A:ILE128 4.8 47.0 1.0 OG1 A:THR103 4.8 32.2 1.0 CA A:SER129 5.0 40.0 1.0 O A:HOH527 5.0 34.2 1.0 CG2 A:THR83 5.0 35.2 1.0

Sodium binding site 2 out of 4 in the Crystal Structure of Fructokinase From Brucella Abortus 2308


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Fructokinase From Brucella Abortus 2308 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:45.5 occ:1.00 CE A:MET107 2.8 42.7 1.0 O A:HOH569 2.9 43.8 1.0 OD1 A:ASN102 3.0 43.7 0.6 N A:ASN102 3.1 35.6 1.0 NH1 A:ARG106 3.3 45.2 1.0 CZ A:ARG106 3.6 47.4 1.0 OE1 A:GLU101 3.8 53.8 1.0 CA A:ASN102 3.8 37.5 0.6 CD A:ARG106 3.9 39.6 1.0 CA A:ASN102 3.9 37.3 0.4 NE A:ARG106 3.9 36.0 1.0 CG A:ASN102 3.9 41.5 0.6 CA A:GLU101 4.0 37.4 1.0 C A:GLU101 4.0 33.8 1.0 O A:ASP100 4.3 37.2 1.0 SD A:MET107 4.4 48.0 1.0 NH2 A:ARG106 4.4 44.7 1.0 CB A:ASN102 4.5 37.7 0.6 CD A:GLU101 4.5 46.8 1.0 CB A:ASN102 4.6 37.8 0.4 CB A:GLU101 4.7 35.4 1.0 CG A:ARG106 4.8 35.4 1.0 ND2 A:ASN102 4.9 38.8 0.6

Sodium binding site 3 out of 4 in the Crystal Structure of Fructokinase From Brucella Abortus 2308


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Fructokinase From Brucella Abortus 2308 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:52.2 occ:1.00 N A:PHE56 3.2 36.7 1.0 CD2 A:PHE56 3.4 59.3 1.0 CB A:ASP55 3.5 30.9 1.0 CA A:ASP55 3.7 37.1 1.0 C A:ASP55 3.9 38.9 1.0 CB A:PHE56 3.9 41.0 1.0 CA A:PHE56 4.1 46.2 1.0 CG A:PHE56 4.1 50.5 1.0 CE2 A:PHE56 4.4 67.6 1.0 O A:HOH502 4.6 44.0 1.0 CG A:ASP55 4.6 37.9 1.0

Sodium binding site 4 out of 4 in the Crystal Structure of Fructokinase From Brucella Abortus 2308


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of Fructokinase From Brucella Abortus 2308 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na404 b:65.1 occ:1.00 N A:GLY297 2.3 84.3 1.0 O A:THR292 2.4 60.5 1.0 O A:HOH545 2.5 51.1 1.0 CA A:GLY297 2.9 66.5 1.0 OD1 A:ASP243 3.0 65.6 1.0 O A:ASP243 3.4 60.4 1.0 C A:THR292 3.4 59.4 1.0 C A:ALA296 3.4 75.8 1.0 N A:ALA296 3.5 81.9 1.0 CA A:VAL293 3.5 61.5 1.0 CG A:ASP243 3.6 74.2 1.0 CA A:ALA296 3.7 72.3 1.0 C A:VAL293 3.7 64.6 1.0 C A:GLY297 3.8 71.5 1.0 OD2 A:ASP243 3.9 80.3 1.0 N A:VAL293 3.9 56.1 1.0 O A:VAL293 3.9 71.3 1.0 O A:GLY297 3.9 93.4 1.0 C A:ASP243 3.9 60.8 1.0 C A:ARG295 4.1 81.1 1.0 N A:ARG295 4.1 69.2 1.0 O A:VAL245 4.1 46.2 1.0 CG2 A:THR292 4.2 48.3 1.0 N A:ASP243 4.3 66.3 1.0 N A:SER294 4.4 63.3 1.0 O A:ALA296 4.5 59.7 1.0 CA A:ASP243 4.5 66.7 1.0 CA A:THR292 4.6 46.7 1.0 CB A:ASP243 4.6 73.2 1.0 O A:ARG295 4.7 87.5 1.0 N A:THR244 4.7 62.2 1.0 CA A:ARG295 4.7 68.4 1.0 N A:VAL245 4.8 56.0 1.0 CB A:VAL293 4.8 54.5 1.0 N A:ALA298 4.8 64.1 1.0 CB A:THR292 4.9 40.5 1.0 C A:SER294 5.0 74.2 1.0

P.S.Horanyi, D.Fox Iii, J.Abendroth, D.Lorimer, T.Edwards. Crystal Structure of Fructokinase From Brucella Abortus 2308 To Be Published.