Atomistry » Sodium » PDB 4lgd-4lzd
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Sodium in PDB, part 111 (files: 4401-4440), PDB 4lgd-4lzd

Experimental structures of coordination spheres of Sodium (Na) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Sodium atoms. PDB files: 4401-4440 (PDB 4lgd-4lzd).
  1. 4lgd (Na: 3) - Structural Basis For Autoactivation of Human MST2 Kinase and Its Regulation By RASSF5
    Other atoms: Mg (4);
  2. 4lgn (Na: 6) - The Structure of Acidothermus Cellulolyticus Family 74 Glycoside Hydrolase
    Other atoms: K (3);
  3. 4lh6 (Na: 2) - Crystal Structure of A Liga Inhibitor
    Other atoms: Br (1);
  4. 4lh7 (Na: 2) - Crystal Structure of A Liga Inhibitor
  5. 4lhl (Na: 1) - Structure of the N-Terminal Domain of the FLO1 Adhesin (N-FLO1P) From the Yeast Saccharomyces Cerevisiae
  6. 4li5 (Na: 1) - Egfr-K in Complex with N-[3-[[5-Chloro-4-(1H-Indol-3-Yl)Pyrimidin-2- Yl]Amino]-4-Methoxy-Phenyl] Prop-2-Enamide
    Other atoms: Cl (1);
  7. 4li7 (Na: 2) - Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide
    Other atoms: F (2); Cl (2);
  8. 4liz (Na: 1) - Crystal Structure of Coactosin From Entamoeba Histolytica
  9. 4ll2 (Na: 1) - Crystal Structure of Plant Lectin with Two Metal Binding Sites From Cicer Arietinum at 2.6 Angstrom Resolution
    Other atoms: Ca (1);
  10. 4llh (Na: 2) - Substrate Bound Outward-Open State of the Symporter Betp
    Other atoms: As (3); Cl (1);
  11. 4lmf (Na: 4) - C1S CUB1-Egf-CUB2
    Other atoms: Ca (12);
  12. 4lmj (Na: 5) - Glic Liganded-Closed-Channel Conformation, Mutant T25'A
    Other atoms: Cl (5);
  13. 4lmk (Na: 5) - Glic Liganded-Closed-Channel Conformation, Mutant Y27'A
    Other atoms: Cl (5);
  14. 4lor (Na: 2) - C1S CUB1-Egf-CUB2 in Complex with A Collagen-Like Peptide From C1Q
    Other atoms: Ca (3);
  15. 4lov (Na: 3) - Crystal Structure of Fimh in Complex with Heptylmannoside
  16. 4loy (Na: 2) - Crystal Structure Analysis of Thrombin in Complex with Compound D57, 5-Chlorothiophene-2-Carboxylic Acid [(S)-2-[2-Methyl-3-(2- Oxopyrrolidin-1-Yl)Benzenesulfonylamino]-3-(4-Methylpiperazin-1- Yl)- 3-Oxopropyl]Amide (SAR107375)
    Other atoms: F (1); Cl (2);
  17. 4lp4 (Na: 4) - Crystal Structure of the Human Rage VC1 Fragment in Space Group P62
  18. 4lpk (Na: 2) - Crystal Structure of K-Ras Wt, Gdp-Bound
    Other atoms: Ca (2);
  19. 4lpy (Na: 1) - Crystal Structure of Tencon Variant G10
  20. 4lqk (Na: 2) - Structure of the Vaccinia Virus Nf- B Antagonist A46
    Other atoms: Br (1);
  21. 4lrt (Na: 4) - Crystal and Solution Structures of the Bifunctional Enzyme (Aldolase/Aldehyde Dehydrogenase) From Thermomonospora Curvata, Reveal A Cofactor-Binding Domain Motion During Nad+ and Coa Accommodation Whithin the Shared Cofactor-Binding Site
    Other atoms: Mg (2);
  22. 4ls8 (Na: 3) - Crystal Structure of Bacillus Subtilis Beta-Ketoacyl-Acp Synthase II (Fabf) in A Covalent Complex with Cerulenin
    Other atoms: Cl (1);
  23. 4lsp (Na: 3) - Crystal Structure of Broadly and Potently Neutralizing Antibody Vrc- CH31 in Complex with Hiv-1 Clade A/E GP120 93TH057
  24. 4lsq (Na: 4) - Crystal Structure of Broadly and Potently Neutralizing Antibody Vrc- CH31 in Complex with Hiv-1 Clade A/E GP120 93TH057 with Loop D and Loop V5 From Clade A Strain 3415_V1_C1
    Other atoms: Cd (5); Cl (3);
  25. 4lss (Na: 3) - Crystal Structure of Broadly and Potently Neutralizing Antibody VRC01 in Complex with Hiv-1 Clade A Strain KER_2018_11 GP120
  26. 4lug (Na: 2) - Crystal Structure of Inorganic Pyrophosphatase PPA1 From Arabidopsis Thaliana
  27. 4lvk (Na: 1) - Mobm Relaxase Domain (Mobv; MOB_PRE) Bound to Plasmid PMV158 Orit Dna (22NT+3'Phosphate). Mn-Bound Crystal Structure at pH 4.6
    Other atoms: Mn (1);
  28. 4lvm (Na: 1) - Mobm Relaxase Domain (Mobv; MOB_PRE) Bound to Plasmid PMV158 Orit Dna (23NT). Mn-Bound Crystal Structure at pH 6.5
    Other atoms: Mg (1); Mn (2); Cl (5);
  29. 4lvs (Na: 2) - Dna Polymerase Beta Mismatched Substrate Complex with MN2+, 2.5 Min
    Other atoms: Mn (6);
  30. 4lw9 (Na: 6) - Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
    Other atoms: Zn (32); Pt (12); Ca (14); Cl (9);
  31. 4lxb (Na: 2) - Crystal Structure Analysis of Thrombin in Complex with Compound D58
    Other atoms: F (2); Cl (1);
  32. 4lxh (Na: 1) - Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda
    Other atoms: Cl (1);
  33. 4lxi (Na: 1) - Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 5, 8-Dif Hopda
    Other atoms: F (2);
  34. 4lxz (Na: 3) - Structure of Human HDAC2 in Complex with Saha (Vorinostat)
    Other atoms: Ca (3); Zn (3);
  35. 4ly1 (Na: 3) - Structure of Human HDAC2 in Complex with Inhibitor 4-(Acetylamino)-N- [2-Amino-5-(Thiophen-2-Yl)Phenyl]Benzamide
    Other atoms: Ca (3); Zn (3);
  36. 4lyi (Na: 1) - Crystal Structure of Apo-BRD4(1)
    Other atoms: I (1);
  37. 4lys (Na: 2) - Crystal Structure of BRD4(1) Bound to Colchiceine
  38. 4lz1 (Na: 1) - X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 12 Nucleobase
    Other atoms: K (1);
  39. 4lz4 (Na: 2) - X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase
    Other atoms: K (2);
  40. 4lzd (Na: 1) - Human Dna Polymerase Mu- Apoenzyme
    Other atoms: Cl (1);
Page generated: Fri Dec 24 09:45:49 2021

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