Sodium in PDB, part 111 (files: 4401-4440),
PDB 4lh6-4lzw
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 4401-4440 (PDB 4lh6-4lzw).
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4lh6 (Na: 2) - Crystal Structure of A Liga Inhibitor
Other atoms:
Br (1);
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4lh7 (Na: 2) - Crystal Structure of A Liga Inhibitor
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4lhl (Na: 1) - Structure of the N-Terminal Domain of the FLO1 Adhesin (N-FLO1P) From the Yeast Saccharomyces Cerevisiae
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4li5 (Na: 1) - Egfr-K in Complex with N-[3-[[5-Chloro-4-(1H-Indol-3-Yl)Pyrimidin-2- Yl]Amino]-4-Methoxy-Phenyl] Prop-2-Enamide
Other atoms:
Cl (1);
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4li7 (Na: 2) - Tankyrase-1 Complexed with Small Molecule Inhibitor 4-Chloro-5-Cyano- N-{2-[4-(4-Fluorobenzoyl)Piperidin-1-Yl]Ethyl}-2-Methoxybenzamide
Other atoms:
F (2);
Cl (2);
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4liz (Na: 1) - Crystal Structure of Coactosin From Entamoeba Histolytica
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4ll2 (Na: 1) - Crystal Structure of Plant Lectin with Two Metal Binding Sites From Cicer Arietinum at 2.6 Angstrom Resolution
Other atoms:
Ca (1);
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4llh (Na: 2) - Substrate Bound Outward-Open State of the Symporter Betp
Other atoms:
As (3);
Cl (1);
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4lmf (Na: 4) - C1S CUB1-Egf-CUB2
Other atoms:
Ca (12);
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4lmj (Na: 5) - Glic Liganded-Closed-Channel Conformation, Mutant T25'A
Other atoms:
Cl (5);
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4lmk (Na: 5) - Glic Liganded-Closed-Channel Conformation, Mutant Y27'A
Other atoms:
Cl (5);
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4lor (Na: 2) - C1S CUB1-Egf-CUB2 in Complex with A Collagen-Like Peptide From C1Q
Other atoms:
Ca (3);
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4lov (Na: 3) - Crystal Structure of Fimh in Complex with Heptylmannoside
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4loy (Na: 2) - Crystal Structure Analysis of Thrombin in Complex with Compound D57, 5-Chlorothiophene-2-Carboxylic Acid [(S)-2-[2-Methyl-3-(2- Oxopyrrolidin-1-Yl)Benzenesulfonylamino]-3-(4-Methylpiperazin-1- Yl)- 3-Oxopropyl]Amide (SAR107375)
Other atoms:
F (1);
Cl (2);
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4lp4 (Na: 4) - Crystal Structure of the Human Rage VC1 Fragment in Space Group P62
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4lpk (Na: 2) - Crystal Structure of K-Ras Wt, Gdp-Bound
Other atoms:
Ca (2);
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4lpy (Na: 1) - Crystal Structure of Tencon Variant G10
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4lqk (Na: 2) - Structure of the Vaccinia Virus Nf- B Antagonist A46
Other atoms:
Br (1);
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4lrt (Na: 4) - Crystal and Solution Structures of the Bifunctional Enzyme (Aldolase/Aldehyde Dehydrogenase) From Thermomonospora Curvata, Reveal A Cofactor-Binding Domain Motion During Nad+ and Coa Accommodation Whithin the Shared Cofactor-Binding Site
Other atoms:
Mg (2);
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4ls8 (Na: 3) - Crystal Structure of Bacillus Subtilis Beta-Ketoacyl-Acp Synthase II (Fabf) in A Covalent Complex with Cerulenin
Other atoms:
Cl (1);
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4lsp (Na: 3) - Crystal Structure of Broadly and Potently Neutralizing Antibody Vrc- CH31 in Complex with Hiv-1 Clade A/E GP120 93TH057
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4lsq (Na: 4) - Crystal Structure of Broadly and Potently Neutralizing Antibody Vrc- CH31 in Complex with Hiv-1 Clade A/E GP120 93TH057 with Loop D and Loop V5 From Clade A Strain 3415_V1_C1
Other atoms:
Cd (5);
Cl (3);
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4lss (Na: 3) - Crystal Structure of Broadly and Potently Neutralizing Antibody VRC01 in Complex with Hiv-1 Clade A Strain KER_2018_11 GP120
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4lug (Na: 2) - Crystal Structure of Inorganic Pyrophosphatase PPA1 From Arabidopsis Thaliana
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4lvk (Na: 1) - Mobm Relaxase Domain (Mobv; MOB_PRE) Bound to Plasmid PMV158 Orit Dna (22NT+3'Phosphate). Mn-Bound Crystal Structure at pH 4.6
Other atoms:
Mn (1);
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4lvm (Na: 1) - Mobm Relaxase Domain (Mobv; MOB_PRE) Bound to Plasmid PMV158 Orit Dna (23NT). Mn-Bound Crystal Structure at pH 6.5
Other atoms:
Mg (1);
Mn (2);
Cl (5);
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4lvs (Na: 2) - Dna Polymerase Beta Mismatched Substrate Complex with MN2+, 2.5 Min
Other atoms:
Mn (6);
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4lw9 (Na: 6) - Crystal Structure of Vibrio Cholera Major Pseudopilin Epsg
Other atoms:
Zn (32);
Pt (12);
Ca (14);
Cl (9);
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4lxb (Na: 2) - Crystal Structure Analysis of Thrombin in Complex with Compound D58
Other atoms:
F (2);
Cl (1);
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4lxh (Na: 1) - Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda
Other atoms:
Cl (1);
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4lxi (Na: 1) - Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 5, 8-Dif Hopda
Other atoms:
F (2);
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4lxz (Na: 3) - Structure of Human HDAC2 in Complex with Saha (Vorinostat)
Other atoms:
Ca (3);
Zn (3);
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4ly1 (Na: 3) - Structure of Human HDAC2 in Complex with Inhibitor 4-(Acetylamino)-N- [2-Amino-5-(Thiophen-2-Yl)Phenyl]Benzamide
Other atoms:
Ca (3);
Zn (3);
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4lyi (Na: 1) - Crystal Structure of Apo-BRD4(1)
Other atoms:
I (1);
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4lys (Na: 2) - Crystal Structure of BRD4(1) Bound to Colchiceine
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4lz1 (Na: 1) - X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 12 Nucleobase
Other atoms:
K (1);
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4lz4 (Na: 2) - X-Ray Structure of the Complex Between Human Thrombin and the Tba Deletion Mutant Lacking Thymine 3 Nucleobase
Other atoms:
K (2);
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4lzd (Na: 1) - Human Dna Polymerase Mu- Apoenzyme
Other atoms:
Cl (1);
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4lzg (Na: 2) - Binary Complex of Human Dna Polymerase Mu with Dna
Other atoms:
Cl (2);
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4lzw (Na: 3) - X-Ray Structure Uridine Phosphorylase From Vibrio Cholerae in Complex with Thymidine at 1.29 A Resolution
Other atoms:
Mg (7);
Cl (8);
Page generated: Thu Dec 28 11:19:39 2023
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