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Sodium in PDB 4lxh: Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda

Enzymatic activity of Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda

All present enzymatic activity of Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda:
3.7.1.8;

Protein crystallography data

The structure of Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda, PDB code: 4lxh was solved by S.Bhowmik, J.T.Bolin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.64 / 2.02
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 66.596, 66.596, 338.179, 90.00, 90.00, 120.00
R / Rfree (%) 21.5 / 25.9

Other elements in 4lxh:

The structure of Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda (pdb code 4lxh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda, PDB code: 4lxh:

Sodium binding site 1 out of 1 in 4lxh

Go back to Sodium Binding Sites List in 4lxh
Sodium binding site 1 out of 1 in the Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the S105A Mutant of A Carbon-Carbon Bond Hydrolase, DXNB2 From Sphingomonas Wittichii RW1, in Complex with 3- Cl Hopda within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:57.9
occ:1.00
 O A:HOH486 2.3 65.7 1.0
O A:ALA164 2.4 54.7 1.0
O A:HOH487 2.4 56.0 1.0
O A:THR167 2.4 44.6 1.0
O A:HOH485 2.7 58.7 1.0
C A:ALA164 3.6 52.3 1.0
C A:THR167 3.6 44.1 1.0
O A:HIS168 3.8 50.1 1.0
O A:HOH473 4.0 56.7 1.0
O A:HOH424 4.1 48.4 1.0
CA A:HIS168 4.1 47.3 1.0
C A:HIS168 4.2 48.2 1.0
O A:ALA165 4.3 49.6 1.0
N A:HIS168 4.3 44.8 1.0
CA A:ALA165 4.3 51.2 1.0
C A:ALA165 4.4 50.5 1.0
N A:ALA165 4.4 50.4 1.0
N A:THR167 4.5 41.7 1.0
CA A:ALA164 4.5 49.3 1.0
CA A:THR167 4.7 43.5 1.0

Reference:

A.C.Ruzzini, S.Bhowmik, K.C.Yam, S.Ghosh, J.T.Bolin, L.D.Eltis. The Lid Domain of the Mcp Hydrolase DXNB2 Contributes to the Reactivity Toward Recalcitrant Pcb Metabolites. Biochemistry V. 52 5685 2013.
ISSN: ISSN 0006-2960
PubMed: 23879719
DOI: 10.1021/BI400774M
Page generated: Tue Dec 15 06:52:50 2020

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