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Sodium in PDB 4ll2: Crystal Structure of Plant Lectin with Two Metal Binding Sites From Cicer Arietinum at 2.6 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of Plant Lectin with Two Metal Binding Sites From Cicer Arietinum at 2.6 Angstrom Resolution, PDB code: 4ll2 was solved by S.Kumar, D.Dube, A.Bhushan, S.Dey, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.60
Space group P 3
Cell size a, b, c (Å), α, β, γ (°) 80.600, 80.600, 69.100, 90.00, 90.00, 120.00
R / Rfree (%) 21.3 / 24.1

Other elements in 4ll2:

The structure of Crystal Structure of Plant Lectin with Two Metal Binding Sites From Cicer Arietinum at 2.6 Angstrom Resolution also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Plant Lectin with Two Metal Binding Sites From Cicer Arietinum at 2.6 Angstrom Resolution (pdb code 4ll2). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Plant Lectin with Two Metal Binding Sites From Cicer Arietinum at 2.6 Angstrom Resolution, PDB code: 4ll2:

Sodium binding site 1 out of 1 in 4ll2

Go back to Sodium Binding Sites List in 4ll2
Sodium binding site 1 out of 1 in the Crystal Structure of Plant Lectin with Two Metal Binding Sites From Cicer Arietinum at 2.6 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Plant Lectin with Two Metal Binding Sites From Cicer Arietinum at 2.6 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:18.6
occ:1.00
O A:ASP121 2.2 8.2 1.0
OD1 A:ASN7 2.2 17.6 1.0
O A:ASP65 2.3 13.3 1.0
O A:ASP174 2.4 16.6 1.0
O A:ASN7 2.4 12.8 1.0
CG A:ASN7 3.0 17.4 1.0
O A:HOH430 3.1 23.5 1.0
C A:ASP121 3.2 8.8 1.0
C A:ASN7 3.4 12.9 1.0
C A:ASP65 3.4 12.6 1.0
ND2 A:ASN7 3.5 18.0 1.0
C A:ASP174 3.5 18.5 1.0
CA A:ASN7 3.8 14.9 1.0
CA A:ASP121 3.8 9.1 1.0
CB A:ASN7 3.9 15.3 1.0
CA A:ASP65 4.3 12.8 1.0
CA A:ASP174 4.3 19.5 1.0
N A:ALA122 4.3 10.0 1.0
N A:CYS66 4.4 12.1 1.0
CA A:CYS66 4.5 11.0 1.0
N A:ALA8 4.5 11.0 1.0
N A:SER175 4.5 18.1 1.0
CB A:ASP65 4.6 13.0 1.0
CB A:CYS66 4.6 10.7 1.0
CB A:ASP121 4.6 8.0 1.0
CA A:ALA122 4.6 8.1 1.0
O A:ILE120 4.6 10.3 1.0
O A:MET173 4.7 21.0 1.0
CA A:SER175 4.7 17.3 1.0
CB A:ALA122 4.8 5.6 1.0
CA A:ALA8 4.9 10.1 1.0

Reference:

S.Kumar, D.Dube, A.Bhushan, S.Dey, S.Sharma, T.P.Singh. Crystal Structure Plant Lectinwith Two Metal Binding Sites From Cicer Arietinum at 2.6 Angstrom Resolution To Be Published.
Page generated: Mon Oct 7 16:47:57 2024

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