Sodium in PDB, part 109 (files: 4321-4360),
PDB 4khu-4kxx
Experimental structures of coordination spheres of Sodium (Na) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Sodium atoms. PDB files: 4321-4360 (PDB 4khu-4kxx).
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4khu (Na: 4) - Ternary Complex of RB69 Mutant L415F with A Ribonucleotide at -1 Position
Other atoms:
Ca (3);
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4khw (Na: 2) - Ternary Complex of RB69 Mutant L415F with Ribonucleotide at -2 Position
Other atoms:
Ca (8);
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4khy (Na: 6) - Ternary Complex of RB69 Mutant L415F with Ribonucleotide at -3 Position
Other atoms:
Ca (6);
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4ki4 (Na: 6) - Ternary Complex of RB69 Mutant L415F with Ribonucleotides at 0 and -1 Position
Other atoms:
Ca (4);
-
4ki6 (Na: 2) - Ternary Complex of RB69 Mutant L415F with Ribonucleotides at -1 and -2 Position
Other atoms:
Ca (6);
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4kjm (Na: 2) - Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb
Other atoms:
Cl (4);
Zn (18);
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4kkx (Na: 3) - Crystal Structure of Tryptophan Synthase From Salmonella Typhimurium with 2-Aminophenol Quinonoid in the Beta Site and the F6 Inhibitor in the Alpha Site
Other atoms:
F (3);
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4kld (Na: 2) - Dna Polymerase Beta Matched Substrate Complex with CA2+, 0 S
Other atoms:
Cl (4);
Ca (2);
-
4klf (Na: 2) - Dna Polymerase Beta Matched Reactant Complex with MG2+, 20 S
Other atoms:
Mg (2);
Cl (2);
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4klg (Na: 4) - Dna Polymerase Beta Matched Product Complex with MG2+, 40 S
Other atoms:
Mg (2);
Cl (4);
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4klh (Na: 2) - Dna Polymerase Beta Matched Product Complex with MN2+, 40 S
Other atoms:
Mn (3);
Cl (3);
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4kli (Na: 3) - Dna Polymerase Beta Matched Product Complex with MG2+, 90 S
Other atoms:
Mg (2);
Cl (2);
-
4klj (Na: 3) - Dna Polymerase Beta Matched Product Complex with MG2+, 5 Min
Other atoms:
Mg (2);
Cl (2);
-
4kll (Na: 4) - Dna Polymerase Beta Matched Product Complex with MG2+, 45 Min
Other atoms:
Mg (1);
Cl (2);
-
4klm (Na: 3) - Dna Polymerase Beta Matched Product Complex with MG2+, 11 H
Other atoms:
Mg (1);
Cl (2);
-
4klo (Na: 3) - Dna Polymerase Beta Matched Nick Complex with MG2+ and Ppi, 30 Min
Other atoms:
Mg (2);
-
4klq (Na: 3) - Observing A Dna Polymerase Choose Right From Wrong.
Other atoms:
Mn (3);
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4kls (Na: 3) - Dna Polymerase Beta Mismatched Reactant Complex with MN2+, 10 Min
Other atoms:
Mn (3);
-
4klt (Na: 2) - Dna Polymerase Beta Mismatched Product Complex with MN2+, 30 Min
Other atoms:
Mn (4);
Cl (1);
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4klu (Na: 2) - Dna Polymerase Beta Mismatched Product Complex with MN2+, 15 H
Other atoms:
Mn (2);
-
4kmg (Na: 1) - Crystal Structure of Cytochrome C6B From Synechococcus Sp. WH8102
Other atoms:
Fe (1);
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4kmr (Na: 1) - Structure of A Putative Transcriptional Regulator of Laci Family From Sanguibacter Keddieii Dsm 10542.
Other atoms:
Mg (1);
-
4knk (Na: 3) - Crystal Structure of Staphylococcus Aureus Hydrolase Amia
Other atoms:
Zn (2);
-
4knl (Na: 8) - Crystal Structure of Staphylococcus Aureus Hydrolase Amia in Complex with Its Ligand
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4kq7 (Na: 7) - Crystal Structure of A Hypothetical Protein (BACUNI_00161) From Bacteroides Uniformis Atcc 8492 at 1.62 A Resolution
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4krg (Na: 2) - Semet Haemonchus Contortus Phosphoethanolamine N-Methyltransferase 1 in Complex with Phosphoethanolamine and S-Adenosylhomocysteine
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4krr (Na: 1) - Crystal Structure of Drosophila Wntd N-Terminal Domain-Linker (Residues 31-240)
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4kt7 (Na: 1) - The Crystal Structure of 4-Diphosphocytidyl-2C-Methyl-D- Erythritolsynthase From Anaerococcus Prevotii Dsm 20548
Other atoms:
Cl (1);
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4ktb (Na: 1) - The Crystal Structure of Posible Asymmetric Diadenosine Tetraphosphate (Ap(4)A) Hydrolases From Jonesia Denitrificans Dsm 20603
Other atoms:
Cl (22);
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4ku0 (Na: 1) - Enterobacteria Phage T4 GP5.4 Paar Repeat Protein in Complex with T4 GP5 Beta-Helix Fragment
Other atoms:
Mg (1);
Fe (1);
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4kuf (Na: 2) - Crystal Structure of the Catalytic Domain of Botulinum Neurotoxin Bont/A C134 Mutant with Mtsea Modified Cys-165 Causing Stretch Disorder
Other atoms:
Zn (1);
-
4kvj (Na: 2) - Crystal Structure of Oryza Sativa Fatty Acid Alpha-Dioxygenase with Hydrogen Peroxide
Other atoms:
Fe (1);
Cl (4);
Ca (1);
-
4kvk (Na: 2) - Crystal Structure of Oryza Sativa Fatty Acid Alpha-Dioxygenase
Other atoms:
Fe (1);
Cl (4);
Ca (1);
-
4kvo (Na: 5) - The Nata (NAA10P/NAA15P) Amino-Terminal Acetyltrasferase Complex Bound to Accoa
Other atoms:
Cl (63);
-
4kwf (Na: 8) - Crystal Structure Analysis of ALDH2+ALDIB33
-
4kwg (Na: 8) - Crystal Structure Analysis of ALDH2+ALDIB13
Other atoms:
Br (2);
-
4kxh (Na: 3) - The X-Ray Crystal Structure of A Dimeric Variant of Human Pancreatic Ribonuclease
Other atoms:
Cl (1);
-
4kxu (Na: 1) - Human Transketolase in Covalent Complex with Donor Ketose D-Fructose- 6-Phosphate
Other atoms:
Mg (1);
-
4kxw (Na: 1) - Human Transketolase in Covalent Complex with Donor Ketose D-Xylulose- 5-Phosphate, Crystal 2
Other atoms:
Mg (1);
-
4kxx (Na: 1) - Human Transketolase in Covalent Complex with Donor Ketose D- Sedoheptulose-7-Phosphate
Other atoms:
Mg (1);
Page generated: Thu Dec 28 11:19:30 2023
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