Sodium in PDB 4kjm: Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb

The structure of Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb, PDB code: 4kjm was solved by M.Cymborowski, I.G.Shabalin, G.Joachimiak, M.Chruszcz, P.Gornicki, R.Zhang, A.Joachimiak, W.Minor, Midwest Center For Structural Genomics, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.28 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	50.783, 59.230, 88.186, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 23

The structure of Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb also contains other interesting chemical elements:

Chlorine	(Cl)	4 atoms
Zinc	(Zn)	18 atoms

The binding sites of Sodium atom in the Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb (pdb code 4kjm). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb, PDB code: 4kjm:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:35.2 occ:1.00 O A:HOH328 2.3 28.1 1.0 O A:LEU72 2.4 27.4 1.0 O A:HOH352 2.4 41.2 1.0 O A:HIS70 2.4 32.1 1.0 O A:HOH321 2.5 39.7 1.0 C A:HIS70 3.5 31.9 1.0 C A:LEU72 3.6 28.2 1.0 N A:LEU72 4.0 27.0 1.0 ND2 A:ASN22 4.1 30.7 1.0 C A:ALA71 4.2 29.3 1.0 CA A:HIS70 4.2 33.5 1.0 O A:LYS69 4.3 26.4 1.0 CA A:LEU72 4.3 26.2 1.0 N A:ALA71 4.4 33.1 1.0 O A:HOH349 4.4 37.3 1.0 O A:ALA71 4.4 28.9 1.0 OD1 A:ASN22 4.5 28.6 1.0 N A:ASN73 4.6 30.1 1.0 CA A:ALA71 4.6 31.8 1.0 CB A:LEU72 4.7 25.2 1.0 CA A:ASN73 4.7 29.1 1.0 CG A:ASN22 4.7 29.1 1.0 CG A:HIS70 4.9 48.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb within 5.0Å range: probe atom residue distance (Å) B Occ B:Na211 b:39.7 occ:1.00 O B:HOH345 2.3 48.5 1.0 O B:LEU72 2.3 26.1 1.0 O B:HIS70 2.5 33.3 1.0 O B:HOH327 2.5 28.9 1.0 O B:HOH357 2.5 40.3 1.0 C B:HIS70 3.5 32.1 1.0 C B:LEU72 3.5 26.6 1.0 N B:LEU72 4.0 27.1 1.0 ND2 B:ASN22 4.0 27.8 1.0 O B:HOH323 4.1 43.3 1.0 C B:ALA71 4.1 30.2 1.0 CA B:LEU72 4.3 25.8 1.0 CA B:HIS70 4.3 33.8 1.0 O B:LYS69 4.3 27.6 1.0 N B:ALA71 4.4 31.2 1.0 OD1 B:ASN22 4.4 25.6 1.0 O B:ALA71 4.4 30.6 1.0 N B:ASN73 4.5 26.3 1.0 CA B:ALA71 4.5 31.7 1.0 CA B:ASN73 4.6 27.2 1.0 CG B:ASN22 4.7 26.7 1.0 CB B:LEU72 4.8 24.0 1.0

M.Cymborowski, I.G.Shabalin, G.Joachimiak, M.Chruszcz, P.Gornicki, R.Zhang, A.Joachimiak, W.Minor. Crystal Structure of the Staphylococcus Aureus Protein (NP_646141.1, Domain 3912-4037) Similar to Streptococcal Adhesins Emb and Ebha/Ebhb To Be Published.