Sodium in PDB 4kmg: Crystal Structure of Cytochrome C6B From Synechococcus Sp. WH8102

The structure of Crystal Structure of Cytochrome C6B From Synechococcus Sp. WH8102, PDB code: 4kmg was solved by P.Zatwarnicki, S.Krzywda, J.Barciszewski, M.Jaskolski, A.Szczepaniak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.95 / 1.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	106.110, 28.980, 24.680, 90.00, 92.30, 90.00
R / Rfree (%)	12 / 18.1

The structure of Crystal Structure of Cytochrome C6B From Synechococcus Sp. WH8102 also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Sodium atom in the Crystal Structure of Cytochrome C6B From Synechococcus Sp. WH8102 (pdb code 4kmg). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Cytochrome C6B From Synechococcus Sp. WH8102, PDB code: 4kmg:

Sodium binding site 1 out of 1 in the Crystal Structure of Cytochrome C6B From Synechococcus Sp. WH8102


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Cytochrome C6B From Synechococcus Sp. WH8102 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na102 b:12.8 occ:0.50 O A:ASN83 2.2 12.1 1.0 OG1 A:THR86 2.4 12.8 1.0 O A:THR86 2.6 11.3 1.0 C A:ASN83 3.4 11.3 1.0 C A:THR86 3.4 11.9 1.0 CB A:THR86 3.6 12.1 1.0 CA A:THR86 3.8 10.7 1.0 N A:THR86 3.8 10.4 1.0 CA A:ASN83 4.2 12.5 1.0 CB A:ALA84 4.2 12.4 1.0 O A:HOH203 4.3 15.8 1.0 CB A:ASN83 4.3 14.8 1.0 N A:ALA84 4.4 11.8 1.0 C A:ALA84 4.4 10.4 1.0 N A:GLN87 4.5 12.3 1.0 CA A:ALA84 4.5 10.9 1.0 O A:ALA84 4.5 11.7 1.0 CG2 A:THR86 4.7 13.8 1.0 N A:TRP85 4.9 10.1 1.0

P.Zatwarnicki, J.Barciszewski, S.Krzywda, M.Jaskolski, P.Kolesinski, A.Szczepaniak. Cytochrome C6B of Synechococcus Sp. Wh 8102 - Crystal Structure and Basic Properties of Novel C6-Like Family Representative. Biochem.Biophys.Res.Commun. V. 443 1131 2014.
ISSN: ISSN 0006-291X
PubMed: 24216109
DOI: 10.1016/J.BBRC.2013.10.167