Sodium in PDB 4ktb: The Crystal Structure of Posible Asymmetric Diadenosine Tetraphosphate (Ap(4)A) Hydrolases From Jonesia Denitrificans Dsm 20603

The structure of The Crystal Structure of Posible Asymmetric Diadenosine Tetraphosphate (Ap(4)A) Hydrolases From Jonesia Denitrificans Dsm 20603, PDB code: 4ktb was solved by K.Tan, Y.Kim, R.Wu, S.Clancy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.84 / 1.94
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	55.489, 69.809, 94.313, 90.00, 90.04, 90.00
R / Rfree (%)	17.3 / 22.4

The structure of The Crystal Structure of Posible Asymmetric Diadenosine Tetraphosphate (Ap(4)A) Hydrolases From Jonesia Denitrificans Dsm 20603 also contains other interesting chemical elements:

Chlorine

(Cl)

22 atoms

The binding sites of Sodium atom in the The Crystal Structure of Posible Asymmetric Diadenosine Tetraphosphate (Ap(4)A) Hydrolases From Jonesia Denitrificans Dsm 20603 (pdb code 4ktb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Crystal Structure of Posible Asymmetric Diadenosine Tetraphosphate (Ap(4)A) Hydrolases From Jonesia Denitrificans Dsm 20603, PDB code: 4ktb:

Sodium binding site 1 out of 1 in the The Crystal Structure of Posible Asymmetric Diadenosine Tetraphosphate (Ap(4)A) Hydrolases From Jonesia Denitrificans Dsm 20603


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Posible Asymmetric Diadenosine Tetraphosphate (Ap(4)A) Hydrolases From Jonesia Denitrificans Dsm 20603 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:20.4 occ:1.00 O A:HOH303 2.3 22.6 1.0 O A:SER74 2.3 12.9 1.0 O A:HOH305 2.3 10.4 1.0 O A:HOH304 2.4 23.3 1.0 O A:HOH306 2.4 13.7 1.0 O A:HOH307 2.9 35.0 1.0 O A:HOH428 3.3 39.2 1.0 C A:SER74 3.5 11.9 1.0 NZ A:LYS93 3.9 26.5 1.0 OD2 A:ASP94 3.9 18.1 1.0 N A:SER74 4.2 10.9 1.0 NH2 A:ARG61 4.2 36.7 1.0 O A:HOH374 4.3 21.3 1.0 CA A:SER74 4.3 11.0 1.0 N A:GLY75 4.5 11.6 1.0 CA A:GLY75 4.5 12.6 1.0 ND1 A:HIS90 4.6 13.4 1.0 CL A:CL202 4.8 25.3 1.0 CG A:ASP94 4.8 16.0 1.0 OD1 A:ASP94 4.8 16.2 1.0 CB A:SER74 4.8 32.1 1.0 NH1 A:ARG61 4.9 43.2 1.0 CE A:LYS93 4.9 24.1 1.0 O A:HOH406 5.0 16.0 1.0 CZ A:ARG61 5.0 39.8 1.0

K.Tan, Y.Kim, R.Wu, S.Clancy, A.Joachimiak. The Crystal Structure of Posible Asymmetric Diadenosine Tetraphosphate (Ap(4)A) Hydrolases From Jonesia Denitrificans Dsm 20603 To Be Published.