Sodium in PDB 4krr: Crystal Structure of Drosophila Wntd N-Terminal Domain-Linker (Residues 31-240)

The structure of Crystal Structure of Drosophila Wntd N-Terminal Domain-Linker (Residues 31-240), PDB code: 4krr was solved by M.L.-H.Chu, H.-J.Choi, V.E.Ahn, D.L.Daniels, R.Nusse, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.81 / 2.12
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	59.625, 59.625, 66.955, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 20.4

The binding sites of Sodium atom in the Crystal Structure of Drosophila Wntd N-Terminal Domain-Linker (Residues 31-240) (pdb code 4krr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Drosophila Wntd N-Terminal Domain-Linker (Residues 31-240), PDB code: 4krr:

Sodium binding site 1 out of 1 in the Crystal Structure of Drosophila Wntd N-Terminal Domain-Linker (Residues 31-240)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Drosophila Wntd N-Terminal Domain-Linker (Residues 31-240) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na305 b:80.1 occ:1.00 O A:ILE107 2.5 82.0 1.0 O A:CYS102 2.7 66.8 1.0 CA A:GLY105 2.8 88.6 1.0 O A:CYS110 2.9 78.0 1.0 N A:ILE107 3.0 83.9 1.0 C A:GLY105 3.0 92.2 1.0 N A:VAL106 3.2 82.1 1.0 N A:GLY105 3.3 77.9 1.0 C A:ILE107 3.4 82.8 1.0 C A:CYS102 3.4 65.4 1.0 CA A:CYS102 3.4 60.1 1.0 CA A:ILE107 3.6 73.2 1.0 O A:ASP101 3.6 69.7 1.0 O A:GLY105 3.8 97.5 1.0 C A:CYS110 3.9 78.1 1.0 CB A:ILE107 3.9 66.7 1.0 C A:VAL106 4.0 88.0 1.0 SG A:CYS110 4.2 81.5 1.0 CA A:VAL106 4.2 85.2 1.0 CA A:GLY111 4.4 76.0 1.0 N A:CYS102 4.4 62.8 1.0 C A:ASP101 4.4 62.2 1.0 CB A:CYS102 4.4 50.8 1.0 N A:GLY111 4.5 80.8 1.0 N A:ALA108 4.6 87.5 1.0 C A:ASN104 4.6 75.0 1.0 N A:ALA103 4.7 62.8 1.0 CG1 A:ILE107 4.8 60.6 1.0 CA A:CYS110 4.9 76.2 1.0 SG A:CYS102 5.0 63.1 1.0

M.L.Chu, V.E.Ahn, H.J.Choi, D.L.Daniels, R.Nusse, W.I.Weis. Structural Studies of Wnts and Identification of An LRP6 Binding Site. Structure V. 21 1235 2013.
ISSN: ISSN 0969-2126
PubMed: 23791946
DOI: 10.1016/J.STR.2013.05.006